LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g06162	ATGGAGCGTATTTCGGAAAAACGATATCCTCTCAGTGCAGTAGATTACAAGTTATATGAAGAGGTTGGGGAAGGCGTCAGTGCCTCAGTATTCCGAGCTCTCTGCATTCCACTCAATGAGATTGTTGCCATCAAAGTGCTTGATCTTGAGAAGTGCAATAATGATTTGGATGGAATTCGGAGAGAGGTACAGACCATGAGCTTGATTGATCATCCAAATCTTTTAAGAGCGTATTGCTCTTTTACTGCTGGGCACAGTCTTTGGGTTGTGATGCCCTACATGGCTGGTGGCTCGTGCCTTCATATAATGAAATCCGCCTTTCCTGAGGGTTTTGAAGAACCTGTTATTGCAACTGTATTGCGTGAGGTTCTCAAAGCTCTTGTTTATCTCCATGCCCATGGGCACATACATAGAGATATTAAGGCTGGGAATATTTTGTTTGATTCTAATGGTGCAGTCAAAGTGGCTGACTTTGGAGTGTCTGCGTGTATGTTTGATACTGGAGATAGGCAACGTTCAAGAAATACTTTTGTTGGAACACCTTGCTGGATGGCTCCAGAAGTTATGCAGCAATTGCATGGATATGATTTTAAAGCAGATATATGGTCGTTTGGTATAACAGCACTTGAACTTGCTCATGGTCATGCCCCATTTTCCAAGTATCCACCGATGAAAGTTTTGCTTATGACTTTGCAGAATGCCCCTCCAGGTCTTGATTATGAGAGAGACAAGCGATTTTCAAAGTCTTTCAAAGAGTTGGTTGCCACTTGCTTAGTCAAAGACCCAAAGAAGCGTCCAAGCTCAGAAAAACTTTTAAAGCACCACTTCTTTAAACATGCACGTGCCACCGAATATCTTGGTCGCACCATTCTTGATGGCCTTGCTCCATTAGGAGATCGTTTTAAAACGCTGAAGGCTAAAGAGGCAGATTTATTGATGCAGAACAAGGCTCTTTATGAGATGGAGCAATTATCTCAGAAAGAATATATTCGAGGAATTAGTGCCTGGAATTTTAACCTGGAAGATTTGAAGAGTCAAGCTGCTCTTATTCAAGATGAAGACATGTCAATTGCAGAAAAGCCAGATACAGATAAGAAGAAAAAAGACATATCAAATGACTCAAAGGTTCCCATATCAAATGACTTAAAGGTTCCCGCGGAGGAGCAATCTGCTTCTAATCATCCAGAGGGTACATCCACACTGGACAAGGAGGATGGATTCAACAATCTTCAGGACTTGGAAAGTTCACTTGCTTCATTCCCTGTTAAACCTCTTCAAGCACTCAAAGGTTGTTTTGATGTCTGTGATGATGATGATGTCAATGATACTAGTCCAAAGGATTTGGATCACAGTTATGGAAGAATTGATAATGAAAGTTCTGGGCCAAGTAAAATGTCGCCTCAAAAAGCTACTCAGCCTAAGAAATTTTTCAGTAGCTCTTTACAACCTGATTTTCCCAAAAAAGTTACTGACGTGGACAGGGATTATTTACAAACAAAATATCCTTCCGAAAGGAATCACAGCGGTCCATTGTTATATCGACAGAGGAAAGATATCAACAACTTTCCATCTGTTGATGACACATCAGAAGGAGCGGTTGTCCAGCGTAGGGGACGGTTTAAGGTCACATCAGCAGATCCCAGTTCAATGGGTCTTTCAAACAACTCTTCTGGCTCAGTTGCTGGAAGTCCTACTCCTAATCCCACCAGTCCCCCAAAACAGAACTTAATGACTGCTTCTATTCTTCCATCACTGCAGTGCATCTTGCAACAGAACGGCTTGCAGAGGGAAGAAATTATTAAACTGATAAAGCACACAGAGCAATCTTATGCAGGTAAGAATGAATCAATAGAGGCAGGAGCAGTTGATATTCCGCAGGCACCACTTGCTACAACTAGAGAAAAAGAGCTGCATTTGCAGGTGATTCAACTCCAACAGAGCATTGGAAGCCTTGTCGACGAATTGCAGAGACAAAAGATGAAAAATGTTCAGTTAGAGAGACAGTTGAGCAGTATGGTCAACAAAATTGAAAAGTAA	2037	0.4168	MERISEKRYPLSAVDYKLYEEVGEGVSASVFRALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMSLIDHPNLLRAYCSFTAGHSLWVVMPYMAGGSCLHIMKSAFPEGFEEPVIATVLREVLKALVYLHAHGHIHRDIKAGNILFDSNGAVKVADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKELVATCLVKDPKKRPSSEKLLKHHFFKHARATEYLGRTILDGLAPLGDRFKTLKAKEADLLMQNKALYEMEQLSQKEYIRGISAWNFNLEDLKSQAALIQDEDMSIAEKPDTDKKKKDISNDSKVPISNDLKVPAEEQSASNHPEGTSTLDKEDGFNNLQDLESSLASFPVKPLQALKGCFDVCDDDDVNDTSPKDLDHSYGRIDNESSGPSKMSPQKATQPKKFFSSSLQPDFPKKVTDVDRDYLQTKYPSERNHSGPLLYRQRKDINNFPSVDDTSEGAVVQRRGRFKVTSADPSSMGLSNNSSGSVAGSPTPNPTSPPKQNLMTASILPSLQCILQQNGLQREEIIKLIKHTEQSYAGKNESIEAGAVDIPQAPLATTREKELHLQVIQLQQSIGSLVDELQRQKMKNVQLERQLSSMVNKIEK	678

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g06162	678	MobiDBLite	consensus disorder prediction	456	485	-	-
	Vifa1g06162	678	Pfam	Protein kinase domain	16	277	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g06162	678	MobiDBLite	consensus disorder prediction	385	407	-	-
	Vifa1g06162	678	Coils	Coil	648	675	-	-
	Vifa1g06162	678	Gene3D	Transferase(Phosphotransferase) domain 1	97	329	-	-
	Vifa1g06162	678	ProSiteProfiles	Protein kinase domain profile.	16	277	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g06162	678	MobiDBLite	consensus disorder prediction	521	575	-	-
	Vifa1g06162	678	PANTHER	SERINE/THREONINE-PROTEIN KINASE FRAY2	6	659	IPR047173	GO:0043539
	Vifa1g06162	678	SUPERFAMILY	Protein kinase-like (PK-like)	15	278	IPR011009	-
	Vifa1g06162	678	SMART	serkin_6	16	277	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g06162	678	MobiDBLite	consensus disorder prediction	355	374	-	-
	Vifa1g06162	678	FunFam	Serine/threonine-protein kinase BLUS1	5	93	-	-
	Vifa1g06162	678	MobiDBLite	consensus disorder prediction	442	489	-	-
	Vifa1g06162	678	MobiDBLite	consensus disorder prediction	546	564	-	-
	Vifa1g06162	678	Gene3D	Phosphorylase Kinase; domain 1	5	92	-	-
	Vifa1g06162	678	CDD	STKc_OSR1_SPAK	15	277	-	-
	Vifa1g06162	678	MobiDBLite	consensus disorder prediction	354	407	-	-
	Vifa1g06162	678	FunFam	serine/threonine-protein kinase BLUS1 isoform X1	97	329	-	-
	Vifa1g06162	678	ProSitePatterns	Protein kinases ATP-binding region signature.	22	45	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g06162	Vifa-Chr1	963323647	963335634	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g06162	1	675	MAP Kinase Kinase Kinase Kinase	AT5G14720	63.415	0.0	871

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE20-Fray	Vifa1g06162		Pkinase	8.6e-59	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g06162	K08835		-	gmx:100778837	1019.61