Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06159 ATGAAGTCTTTTTCTCTTTTCTCAACTATACTTTTCTACATTCATCTGCTTTGTCTGTTTACCTTATGTTTAATGTGCTTTGGTCCAAACAAAGTTGCGGCAGTGACGATACTAGGAAACCAAACAGATCATTTTGCATTGCTTAAATTCAAAGAATCAATATCCGTTGATCCATATAGAACTCTAAAATCTTGGAATTCTTCCATCCACTTCTGCAAGTGGTTTGGAATCACATGCAACCCCATGCATCAAAGAGTTATAGAGTTGACCTTAGATGGATCTGAATTACATGGATCTTTATCTCCCTATGTAGGCAATCTCACTTTTCTGAAAATTCTCTACCTCAGAAACAACAGCTTCTTTGGAGAAATTCCACAGGAATTGGGTCAGTTGCTACACTTGCAACAACTGTTTCTCACCAATAATTCATTTGCAGGAAATCTTTCAAGTTTAATGCGTTTTACGTGTGCTTCTAACAACATACAAGGAGATATTCCACAAGAAATATGTCTACTCAAAAACCTGTCAATCTTACTTTTGGAGAATAACTTGCATGGCACTCTTCCACTCAACACTTTCAACAACCTCCCCAATCTTCAAAAATTTGAAATTGGAGGAAATCATTTTTCAGGTCCAATCACTTCCATGATGAACGCATCAGCCATTGCGTTGTTTGATATAAGTGGAAATCATTTTGCGGGACAAGTTCCAAGTCTAGGAAGCCTAAAATATTTACAATATCTGAACTTGGAAGACAACAATTTAGGTAATAATTCAACTGAGGACTTGGAGTTTTTAAAATCTTTGACAAACTGTAGAATTTTGTATGGGGTTTCTATTGCCACAAACAATTTTGGAGGCATTTTACCAAATACTATAGGAAATTTATCCACTGAACTTAAACTACTATTTCTTGGGAATAATATGATATCAGGACAAATTCCTTCTGAGTTAGGATGTCTAGTTGGCTTAATTCTCTTGAGCATGGGGGGTAACCAATTTGAAGGAAATATTCCAGCTACTTTCGGGATGTTCCAAAAGATGCAAGTGTTAGTTTTGAATGAGAACAAGTTGTCAGGAGATATACCACACTTTATAAGTAATCTTAGTCAATTGTATCATTTGGAACTACATCATAATATATTTGGAGGAAATATTCCTCCAAGCATAGGAAGCTGTCAAAAGCTACAATATCTTGATCTTTCGCAGAATAAGCTTAAAGGAACCATTCCTTTAGAGGTTTTTAATCTTTTATCTTTAACAAATTTATTGGACTTGTCACATAACTCTTTGAGTGGTAGCTTACCAGGAGAAGTGGGTATGTTAAAAAATATTGATAAGCTAGATGTCTCTAATAACCATTTGTCAGGGGATATTCCAATATCTATTGGTGAGTGCGTAAGTTTAGAATACCTTCTTTTGCAAGGTAACTCCTTCAATGGAACAATACCATCCTCTTTGGCTTTTCTCAAAGGTAAGGTACCAACAAACGGTGTCTTTGGAAATGCATCCCAAGTAGCAATGATTGGAAACAATAAGCTTTGTGGAGGTATTTTACAGATGCGTCTACCACCATGCTCCATCAAGGATATGAAACACACAAGACACCATAAAATTATGTTGGTAGTCGTTGGTGTGCTTTCTTTTCTTCTCATATTTTCTATTTTTCTAACTATCTATTGGATGAGAAAAAGAAATCAAGAACGATCTTTTGATTCACCAACAATTGATCAACTAGATAAGGTTTCATATCGAGACTTACATCGAGGAACCGGTGGATTCTCGATTACAAACTTGATTGGATCAGGAAGTTTTGGTTCTGTGTACAAAGGAAATCTTGTGTCAGAAGACAATTTTGTTGCGATAAAGGTCCTAAATCTCCAAAAGAAGGGGGCTCACAAGAGTTTTATTCTTGAATGCAATGCACTCAAAAATATTAGACACCGAAATTTAGTTAAGATTATAACATGCTGTTCTAGTTCAGATTATAAAGGTCAAGAATTCAAAGCTCTAGTTTTTGATTACATGAAAAACGGAAGCTTAGAAGAATGGTTGCATCCTGAGATTTTAAATGCAGAGAATCAAGCAACATTGGACCTCACTCACAGAGTAAACATCATTACTGATGTTGCTTTGGCATTGCATTATCTTCATCAAGAGTGTGAACAATTGATCATTCATTGTGATCTAAAGCCAAGTAATGTACTTCTTGATGATGACATGGTTGCTCATGTGAGTGATTTTGGCATAGCAAGACTTGTCTCAGTCATTGAAGGTACTTCTCATAAGGAAACCAGTACAATTGGAATAAAAGGGACTATTGGCTATGCTCCTCCAGAGTATGGAATGGGGTGTGAAGTGTGTTAA 2367 0.3587 MKSFSLFSTILFYIHLLCLFTLCLMCFGPNKVAAVTILGNQTDHFALLKFKESISVDPYRTLKSWNSSIHFCKWFGITCNPMHQRVIELTLDGSELHGSLSPYVGNLTFLKILYLRNNSFFGEIPQELGQLLHLQQLFLTNNSFAGNLSSLMRFTCASNNIQGDIPQEICLLKNLSILLLENNLHGTLPLNTFNNLPNLQKFEIGGNHFSGPITSMMNASAIALFDISGNHFAGQVPSLGSLKYLQYLNLEDNNLGNNSTEDLEFLKSLTNCRILYGVSIATNNFGGILPNTIGNLSTELKLLFLGNNMISGQIPSELGCLVGLILLSMGGNQFEGNIPATFGMFQKMQVLVLNENKLSGDIPHFISNLSQLYHLELHHNIFGGNIPPSIGSCQKLQYLDLSQNKLKGTIPLEVFNLLSLTNLLDLSHNSLSGSLPGEVGMLKNIDKLDVSNNHLSGDIPISIGECVSLEYLLLQGNSFNGTIPSSLAFLKGKVPTNGVFGNASQVAMIGNNKLCGGILQMRLPPCSIKDMKHTRHHKIMLVVVGVLSFLLIFSIFLTIYWMRKRNQERSFDSPTIDQLDKVSYRDLHRGTGGFSITNLIGSGSFGSVYKGNLVSEDNFVAIKVLNLQKKGAHKSFILECNALKNIRHRNLVKIITCCSSSDYKGQEFKALVFDYMKNGSLEEWLHPEILNAENQATLDLTHRVNIITDVALALHYLHQECEQLIIHCDLKPSNVLLDDDMVAHVSDFGIARLVSVIEGTSHKETSTIGIKGTIGYAPPEYGMGCEVC 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06159 788 ProSitePatterns Protein kinases ATP-binding region signature. 600 623 IPR017441 GO:0005524
Vifa1g06159 788 Gene3D Ribonuclease Inhibitor 181 526 IPR032675 -
Vifa1g06159 788 Gene3D Phosphorylase Kinase; domain 1 575 675 - -
Vifa1g06159 788 ProSiteProfiles Protein kinase domain profile. 594 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06159 788 PANTHER OS04G0122200 PROTEIN 51 784 - -
Vifa1g06159 788 Gene3D Ribonuclease Inhibitor 42 156 IPR032675 -
Vifa1g06159 788 Pfam Leucine rich repeat N-terminal domain 42 80 IPR013210 -
Vifa1g06159 788 ProSitePatterns Serine/Threonine protein kinases active-site signature. 725 737 IPR008271 GO:0004672|GO:0006468
Vifa1g06159 788 FunFam LRR receptor-like serine/threonine-protein kinase EFR 565 675 - -
Vifa1g06159 788 FunFam Os07g0541700 protein 676 773 - -
Vifa1g06159 788 SUPERFAMILY L domain-like 255 515 - -
Vifa1g06159 788 SMART serkin_6 594 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06159 788 FunFam Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 42 152 - -
Vifa1g06159 788 Gene3D Transferase(Phosphotransferase) domain 1 676 788 - -
Vifa1g06159 788 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 268 491 - -
Vifa1g06159 788 SUPERFAMILY L domain-like 41 270 - -
Vifa1g06159 788 SUPERFAMILY Protein kinase-like (PK-like) 569 785 IPR011009 -
Vifa1g06159 788 PRINTS Leucine-rich repeat signature 396 409 - -
Vifa1g06159 788 PRINTS Leucine-rich repeat signature 442 455 - -
Vifa1g06159 788 Pfam Protein kinase domain 596 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06159 Vifa-Chr1 962555280 962558117 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06159 40 786 Receptor kinase-like Gene Family AT3G47570 39.909 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vifa1g06159 Pkinase 1.6e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06159 - - gmx:102664380 738.413