Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06158 ATGAAGTCTTTTTCTCTTTTCTCAACTATACTTTTCTACATTCATCTGCTTTGTCTGTTTACCTTATGTTTAATGTGCTTTGGTCCAAACAAAGTTGCGGCAGTGACGATACTAGGAAACCAAACAGATCATTTTGCATTGCTTAAATTCAAAGAATCAATATCCGTTGATCCATATAGAACTCTAAAATCTTGGAATTCTTCCATCCACTTCTGCAAGTGGTTTGGAATCACATGCAACCCCATGCATCAAAGAGTTATAGAGTTGACCTTAGATGGATCTGAATTACATGGATCTTTATCTCCCTATGTAGGCAATCTCACTTTTCTGAAAATTCTCTACCTCAGAAACAACAGCTTCTTTGGAGAAATTCCACAGGAATTGGGTCAGTTGCTACACTTGCAACAACTGTTTCTCACCAATAATTCATTTGCAGGAGGAATCGATTCATTCATAGGAAATCTTTCAAGTTTAATGCGTTTTACGTGTGCTTCTAACAACATACAAGGAGATATTCCACAAGAAATATGTCTACTCAAAAACCTGTCAATCTTACTTTTGGAGAATAACTTGCATGGCACTCTTCCACTCAACACTTTCAACAACCTCCCCAATCTTCAAAAATTTGAAATTGGAGGAAATCATTTTTCAGGTCCAATCACTTCCATGATGAACGCATCAGCCATTGCGTTGTTTGATATAAGTGGAAATCATTTTGCGGGACAAGTTCCAAGTCTAGGAAGCCTAAAATATTTACAATATCTGAACTTGGAAGACAACAATTTAGGTAATAATTCAACTGAGGACTTGGAGTTTTTAAAATCTTTGACAAACTGTAGAATTTTGTATGGGGTTTCTATTGCCACAAACAATTTTGGAGGCATTTTACCAAATACTATAGGAAATTTATCCACTGAACTTAAACTACTATTTCTTGGGAATAATATGATATCAGGACAAATTCCTTCTGAGTTAGGATGTCTAGTTGGCTTAATTCTCTTGAGCATGGGGGGTAACCAATTTGAAGGAAATATTCCAGCTACTTTCGGGATGTTCCAAAAGATGCAAGTGTTAGTTTTGAATGAGAACAAGTTGTCAGGAGATATACCACACTTTATAAGTAATCTTAGTCAATTGTATCATTTGGAACTACATCATAATATATTTGGAGGAAATATTCCTCCAAGCATAGGAAGCTGTCAAAAGCTACAATATCTTGATCTTTCGCAGAATAAGCTTAAAGGAACCATTCCTTTAGAGGTTTTTAATCTTTTATCTTTAACAAATTTATTGGACTTGTCACATAACTCTTTGAGTGGTAGCTTACCAGGAGAAGTGGGTATGTTAAAAAATATTGATAAGCTAGATGTCTCTAATAACCATTTGTCAGGGGATATTCCAATATCTATTGGTGAGTGCGTAAGTTTAGAATACCTTCTTTTGCAAGGTAACTCCTTCAATGGAACAATACCATCCTCTTTGGCTTTTCTCAAAGGTAAGGTACCAACAAACGGTGTCTTTGGAAATGCATCCCAAGTAGCAATGATTGGAAACAATAAGCTTTGTGGAGGTATTTTACAGATGCGTCTACCACCATGCTCCATCAAGGATATGAAACACACAAGACACCATAAAATTATGTTGGTAGTCGTTGGTGTGCTTTCTTTTCTTCTCATATTTTCTATTTTTCTAACTATCTATTGGATGAGAAAAAGAAATCAAGAACGATCTTTTGATTCACCAACAATTGATCAACTAGATAAGGTTTCATATCGAGACTTACATCGAGGAACCGGTGGATTCTCGATTACAAACTTGATTGGATCAGGAAGTTTTGGTTCTGTGTACAAAGGAAATCTTGTGTCAGAAGACAATTTTGTTGCGATAAAGGTCCTAAATCTCCAAAAGAAGGGGGCTCACAAGAGTTTTATTCTTGAATGCAATGCACTCAAAAATATTAGACACCGAAATTTAGTTAAGATTATAACATGCTGTTCTAGTTCAGATTATAAAGGTCAAGAATTCAAAGCTCTAGTTTTTGATTACATGAAAAACGGAAGCTTAGAAGAATGGTTGCATCCTGAGATTTTAAATGCAGAGAATCAAGCAACATTGGACCTCACTCACAGAGTAAACATCATTACTGATGTTGCTTTGGCATTGCATTATCTTCATCAAGAGTGTGAACAATTGATCATTCATTGTGATCTAAAGCCAAGTAATGTACTTCTTGATGATGACATGGTTGCTCATGTGAGTGATTTTGGCATAGCAAGACTTGTCTCAGTCATTGAAGGTACTTCTCATAAGGAAACCAGTACAATTGGAATAAAAGGGACTATTGGCTATGCTCCTCCAGAGTATGGAATGGGGTGTGAAGTGTGTTAA 2388 0.3589 MKSFSLFSTILFYIHLLCLFTLCLMCFGPNKVAAVTILGNQTDHFALLKFKESISVDPYRTLKSWNSSIHFCKWFGITCNPMHQRVIELTLDGSELHGSLSPYVGNLTFLKILYLRNNSFFGEIPQELGQLLHLQQLFLTNNSFAGGIDSFIGNLSSLMRFTCASNNIQGDIPQEICLLKNLSILLLENNLHGTLPLNTFNNLPNLQKFEIGGNHFSGPITSMMNASAIALFDISGNHFAGQVPSLGSLKYLQYLNLEDNNLGNNSTEDLEFLKSLTNCRILYGVSIATNNFGGILPNTIGNLSTELKLLFLGNNMISGQIPSELGCLVGLILLSMGGNQFEGNIPATFGMFQKMQVLVLNENKLSGDIPHFISNLSQLYHLELHHNIFGGNIPPSIGSCQKLQYLDLSQNKLKGTIPLEVFNLLSLTNLLDLSHNSLSGSLPGEVGMLKNIDKLDVSNNHLSGDIPISIGECVSLEYLLLQGNSFNGTIPSSLAFLKGKVPTNGVFGNASQVAMIGNNKLCGGILQMRLPPCSIKDMKHTRHHKIMLVVVGVLSFLLIFSIFLTIYWMRKRNQERSFDSPTIDQLDKVSYRDLHRGTGGFSITNLIGSGSFGSVYKGNLVSEDNFVAIKVLNLQKKGAHKSFILECNALKNIRHRNLVKIITCCSSSDYKGQEFKALVFDYMKNGSLEEWLHPEILNAENQATLDLTHRVNIITDVALALHYLHQECEQLIIHCDLKPSNVLLDDDMVAHVSDFGIARLVSVIEGTSHKETSTIGIKGTIGYAPPEYGMGCEVC 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06158 795 FunFam Nuclear pore complex protein NUP107 40 197 - -
Vifa1g06158 795 SMART serkin_6 601 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06158 795 PRINTS Leucine-rich repeat signature 449 462 - -
Vifa1g06158 795 PRINTS Leucine-rich repeat signature 403 416 - -
Vifa1g06158 795 SUPERFAMILY L domain-like 41 277 - -
Vifa1g06158 795 ProSitePatterns Protein kinases ATP-binding region signature. 607 630 IPR017441 GO:0005524
Vifa1g06158 795 Gene3D Ribonuclease Inhibitor 224 281 IPR032675 -
Vifa1g06158 795 Gene3D Transferase(Phosphotransferase) domain 1 683 795 - -
Vifa1g06158 795 Pfam Protein kinase domain 603 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06158 795 ProSitePatterns Serine/Threonine protein kinases active-site signature. 732 744 IPR008271 GO:0004672|GO:0006468
Vifa1g06158 795 FunFam LRR receptor-like serine/threonine-protein kinase EFR 572 682 - -
Vifa1g06158 795 Pfam Leucine rich repeat N-terminal domain 42 80 IPR013210 -
Vifa1g06158 795 Gene3D Ribonuclease Inhibitor 282 349 IPR032675 -
Vifa1g06158 795 Gene3D Ribonuclease Inhibitor 39 223 IPR032675 -
Vifa1g06158 795 Gene3D Phosphorylase Kinase; domain 1 582 682 - -
Vifa1g06158 795 PANTHER OS04G0122200 PROTEIN 51 791 - -
Vifa1g06158 795 SUPERFAMILY L domain-like 262 522 - -
Vifa1g06158 795 ProSiteProfiles Protein kinase domain profile. 601 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06158 795 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 275 498 - -
Vifa1g06158 795 Gene3D Ribonuclease Inhibitor 350 430 IPR032675 -
Vifa1g06158 795 Gene3D Ribonuclease Inhibitor 431 531 IPR032675 -
Vifa1g06158 795 SUPERFAMILY Protein kinase-like (PK-like) 576 792 IPR011009 -
Vifa1g06158 795 FunFam Os07g0541700 protein 683 780 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06158 Vifa-Chr1 962555280 962558117 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06158 40 793 Receptor kinase-like Gene Family AT3G47570 40.023 0.0 598
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vifa1g06158 Pkinase 1.6e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06158 - - gmx:102664380 750.74