Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06156 ATGAAGTCTTTTTCTCTCTTGTCACCTATTCTTTTTCTCTTTATCTTAACTTTAATATGCTTTGGTCCTAACAAAATTGTGGCAATGACATTAGGAAACCAAACTGATTATTTAGCATTGCTCCAATTCAAAAAATCAATAACCAGTGATCCATATTCAACTCTTGAATCTTGGAATTCTTCCATCCACTTCTGTAAATGGCGTGGAATCACATGCAGCCCCATGCATCAAAGAGTTATTGAGTTGAACTTGAAAGGATATGAGTTGCATGGATCTTTATCTCCTCATGTTGGAAATCTCACTTTTCTGATATCTCTCAACCTTCGAAACAACAGCTTCTTTGGAGAAATTCCACAGGAGTTGGGTCAGTTGCTACAATTGCAACAACTTTCTCTCACCAATAACTCATTTGTAGGTGAAATTCCTACAAACCTGACATTTTGCTCCAATCTCACCAGCTTGTATTTGGATAATAACAAACTCATTGGGAATCTTTCAAGCTTGACGCGATTTTCGTGTGGTTCTAACAACATACAAGGAAATATTCCACAAGAAATATGTCACCTCAAAAACTTGTCACTTTTATTTTTGGGCCAGAACGAATTTTCCGGTACCATTCCTTCTTGTTTTTACAACATTTCATCACTTACTAACCTTGCCATGCCAATGAATAGGATTCATGGCTCTCTTCCACTCAACATGTTCAACACCCTCCCCCATCTCCAAGAATTATATATTGGTGCAAATCAGTTTTCTGGTCCAATTGTTAATTCCATAATAAATGCTACTAGTATTACAACGTTAAGTTTAGAGGATAATCATTTTGTAGGACAAGTTCCAAGTCTAGCAAGGTTAAGAGGTTTACAATATCTGAATTTGGAAGATAACAATTTAGGTAACAATTCAACAAAGGATTTGGAGTTTCTAAAATCTTTGACAAACTCTAGTAAATTGTATGGGATATCAATTGCCAATAATAATTTTGGAGGCATTCTGCCAAATTCTATAGGCAATTTATCCACCGAGCTTAAACTACTATTTCTTGGGGGTAATATGATATCAGGACAAATTCCTCCCGAGATAGGATATCTAGTTAGCTTAATTCTCTTGGCCATGGAACAAAACCAATTGGAAGGAAATATTCCAACTACTTTTGGAAATTTACAAAATATGCAGGTGTTAGCTTTGAATGAAAACAAGCTGTCAGGAGATATACCATCCTCTATAGGTAATCTTAGTCAATTGTATAAATTGGATTTACATCTTAATATGTTTGAAGGAAATATTCCTCCAAGCATAGGTAATTGTCAAAAGTTACAAAGTCTAGACCTTTCACAAAATAAGCTTAGAGGAACCATACCATTAGAAATTTTCAATCTTGTTTCTTTAACAAACTTATTGGACTTATCACATAACTCTTTCAGTGGTAGCTTACCAAGAGAAGTCCGTATGCTAAAAAATATTGGTTTGCTAAATTTCTCTTATAATCATTTGTCGGGGGAGATTCCGATATCTATTAGTGAATGCGCAATCTTAGAATACCTTGATTTGCAAGGGAACTCCTTCAACGGAACGATACCACCCTCTTTGGCTTCTCTCAAAGGTCTTCAATATTTAGACCTTTCAATCAATCAATTGTCTGGTTCAATTCCTGGTGTTATACAAAACATTGTTGGTTTAAAACACTTTAATGTTTCTTTTAATATGTTGGAAGGTGAGGTACCAACAGAAGGTGTTTTTGAAAATTCAGCCCAAATAGAAATGATTGGAAATAAAAAGCTTTGTGGAGGTATTTCACAGCTGCATCTACCAGCATGCCCCACCAAGGATAGAAAACACAAAAAACACCATAAGTTCTGGTTGATTGCAATGATAGTTAGTGTGCTTTGTTTTCTTCTCATACTTTCAACTTCTATAACTAGCTACTGGATGAGGAAAAGAAACCAAAAACGATCTTTTGATTCACCAACAATTGATCAACTAAATAAGGTGTCATACCAAGACTTACATCGAGGAACTGATGGATTCTCAATTACAAACTTGATTGGATCAGGAAGTTTTGGTTCCGTATACAAAGGAAATCTTATGACAGAAGACAATTTTGTTGCCATAAAGGTCCTGAATCTCCAGAAGAAGGGAGCTCATAAGAGTTTTATTCTTGAATGCAATGCACTCAAAAATATTAGACACCGAAATTTAGTTAAGATTATAACATGTTGTTCAAGTTCAGATTATAAAGGTCAAGACTTCAAAGCTCTAGTTTTTGATTACATGAAAAATGGAAGCTTAGAACAATGGTTGCATTCTGAGATTTCAAATCTAGAGAATCAAACATCATTGGACCTCACTCATAGAGTCAACATCATTACCGACGTTGCTTCAGCATTACATTATCTTCATCAGGATTGTGAACAGTTGATCCTTCATTGTGATCTAAAGCCAAGTAATGTACTTCTTGATGATGACATGGTTGCTCATGTGAGTGATTTTGGCATAGCAAGACTTGTCTCAGTCATTGACGATACTTCTCATAAGAAAACCAGTACAATTGGAATAAAAGGGACTGTTGGCTATGCTCCTCCAGAGTATGGAATGGGCTCTGAAGTGTCTACATGTGGTGACATGTATAGCTTTGGAATCTTAATGTTGGAAATGGTTACTGGTAGAAGACCCACAAATAAAGTTTTTGAAGATGGTCAAAATCTGCATAACTTTGTCGCAAATTCGTTTCCTGACAATCTTATAAACATTTTGGACCCGAGTCTTGTATCAAGAGATGCAGAAGTAGAAATACAAGATGGAAATCGTAAGAATTTTATTCCAAATGTTGAGGAGTGCCTAGTTTCACTTTTTAGAATTGGACTTAGTTGTTCAATGGAACAACCAAAGGAACGGATGAATATTGTGGATGTCACCAGAGAGCTTAACATAATTAGAAAAACTTTTCTAGCAGGTGTTCGAGCTCATAATTAG 2973 0.3549 MKSFSLLSPILFLFILTLICFGPNKIVAMTLGNQTDYLALLQFKKSITSDPYSTLESWNSSIHFCKWRGITCSPMHQRVIELNLKGYELHGSLSPHVGNLTFLISLNLRNNSFFGEIPQELGQLLQLQQLSLTNNSFVGEIPTNLTFCSNLTSLYLDNNKLIGNLSSLTRFSCGSNNIQGNIPQEICHLKNLSLLFLGQNEFSGTIPSCFYNISSLTNLAMPMNRIHGSLPLNMFNTLPHLQELYIGANQFSGPIVNSIINATSITTLSLEDNHFVGQVPSLARLRGLQYLNLEDNNLGNNSTKDLEFLKSLTNSSKLYGISIANNNFGGILPNSIGNLSTELKLLFLGGNMISGQIPPEIGYLVSLILLAMEQNQLEGNIPTTFGNLQNMQVLALNENKLSGDIPSSIGNLSQLYKLDLHLNMFEGNIPPSIGNCQKLQSLDLSQNKLRGTIPLEIFNLVSLTNLLDLSHNSFSGSLPREVRMLKNIGLLNFSYNHLSGEIPISISECAILEYLDLQGNSFNGTIPPSLASLKGLQYLDLSINQLSGSIPGVIQNIVGLKHFNVSFNMLEGEVPTEGVFENSAQIEMIGNKKLCGGISQLHLPACPTKDRKHKKHHKFWLIAMIVSVLCFLLILSTSITSYWMRKRNQKRSFDSPTIDQLNKVSYQDLHRGTDGFSITNLIGSGSFGSVYKGNLMTEDNFVAIKVLNLQKKGAHKSFILECNALKNIRHRNLVKIITCCSSSDYKGQDFKALVFDYMKNGSLEQWLHSEISNLENQTSLDLTHRVNIITDVASALHYLHQDCEQLILHCDLKPSNVLLDDDMVAHVSDFGIARLVSVIDDTSHKKTSTIGIKGTVGYAPPEYGMGSEVSTCGDMYSFGILMLEMVTGRRPTNKVFEDGQNLHNFVANSFPDNLINILDPSLVSRDAEVEIQDGNRKNFIPNVEECLVSLFRIGLSCSMEQPKERMNIVDVTRELNIIRKTFLAGVRAHN 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06156 990 ProSiteProfiles Protein kinase domain profile. 676 983 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06156 990 PRINTS Leucine-rich repeat signature 439 452 - -
Vifa1g06156 990 PRINTS Leucine-rich repeat signature 533 546 - -
Vifa1g06156 990 Pfam Protein kinase domain 678 901 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06156 990 Gene3D Ribonuclease Inhibitor 238 608 IPR032675 -
Vifa1g06156 990 Gene3D Phosphorylase Kinase; domain 1 657 757 - -
Vifa1g06156 990 FunFam LRR receptor-like serine/threonine-protein kinase EFR 304 612 - -
Vifa1g06156 990 FunFam LRR receptor-like serine/threonine-protein kinase EFR 647 757 - -
Vifa1g06156 990 SMART LRR_typ_2 189 212 IPR003591 -
Vifa1g06156 990 SMART LRR_typ_2 533 556 IPR003591 -
Vifa1g06156 990 SMART LRR_typ_2 100 124 IPR003591 -
Vifa1g06156 990 SMART LRR_typ_2 436 460 IPR003591 -
Vifa1g06156 990 SMART LRR_typ_2 388 412 IPR003591 -
Vifa1g06156 990 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Vifa1g06156 990 SMART serkin_6 676 983 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06156 990 SUPERFAMILY L domain-like 57 328 - -
Vifa1g06156 990 FunFam Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 35 146 - -
Vifa1g06156 990 SUPERFAMILY L domain-like 315 596 - -
Vifa1g06156 990 SUPERFAMILY Protein kinase-like (PK-like) 651 975 IPR011009 -
Vifa1g06156 990 SMART LRR_sd22_2 436 457 - -
Vifa1g06156 990 SMART LRR_sd22_2 533 559 - -
Vifa1g06156 990 SMART LRR_sd22_2 148 167 - -
Vifa1g06156 990 SMART LRR_sd22_2 189 215 - -
Vifa1g06156 990 SMART LRR_sd22_2 388 414 - -
Vifa1g06156 990 SMART LRR_sd22_2 340 355 - -
Vifa1g06156 990 Pfam Leucine rich repeat 512 570 IPR001611 GO:0005515
Vifa1g06156 990 ProSitePatterns Serine/Threonine protein kinases active-site signature. 807 819 IPR008271 GO:0004672|GO:0006468
Vifa1g06156 990 Gene3D Ribonuclease Inhibitor 33 163 IPR032675 -
Vifa1g06156 990 ProSitePatterns Protein kinases ATP-binding region signature. 682 705 IPR017441 GO:0005524
Vifa1g06156 990 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 758 987 - -
Vifa1g06156 990 Gene3D Ribonuclease Inhibitor 164 236 IPR032675 -
Vifa1g06156 990 PANTHER OS04G0122200 PROTEIN 39 979 - -
Vifa1g06156 990 Gene3D Transferase(Phosphotransferase) domain 1 758 984 - -
Vifa1g06156 990 ProSiteProfiles Leucine-rich repeat profile. 150 169 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06156 Vifa-Chr1 962447772 962451082 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06156 33 988 Receptor kinase-like Gene Family AT3G47570 43.186 0.0 786
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vifa1g06156 Pkinase 3.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06156 - - gmx:100801459 1231.85