Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06154 ATGAAGCATTTTTCTTTCTTGTTACCTATATTTTGTTATGTATACCTTTATCTCTTTCTTCTCCTTACTTTAAACAGAACCGTATCATTAGCTTTGGAATTAGGAAACCAAACTGATCATTTGGCTTTGCTCAAATTCAAAGAATCTATATCCAGTGATCCATATAGAATCCTTGATTCTTGGAATGGTTCCCTCCACTTTTGTAGTTGGCATGGAATCACATGCAATCTCATGCATCAAAGAGTTACAAAGTTGGAGTTACAAGGATACAAGTTGCATGGATCCTTATCTCCTTATGTTGGCAACCTCTCTCGTATAAGAAGCCTCAACCTTGGAAATAATAGCTTCTTTGGAAAAATTCCAACGGAATTGGGTCACTTGTCACAATTGCATAGACTCTTTCTAACCAATAACTCGTTTGCAGGAGAAATTCTTATGAACTTGACAAATTATTCCAAACTTAATATTGTGTACTTATATGGTAACAAACTCACCGGAAAAATACCAACAGAAATCGGCTCTCTTCAAAAGCTTCGTTACATGAACATTGGACAAAACAATTTAACCGGACAAGTCCCGCCATCAATAGGTAATCTTTCTTCCTTGATAGGTTTTGGGGTTAATTATAACAACTTGGAGGGAGAATTTCCTGGCGAAATATGTCACCTTAAAAACTTGACATTAATAACAATGGTTGTCAACAACCTATCCGGTAGACTTCCACCATGCCTTTATAATATGTCATCTCTTACTTTCTTCGCAATCACATTAAATCGCTTTGGTGGATCTCTTCCACCCAACATGTTCCAAACTCTCCCAAATCTCCAAACTTTTGAAATAGGTGGGAATGAAATCTTAGGTACAATCCCAACGTCCATATCAAATGCTTCTACCTTGACATTAGTTGAACTTGCTGAAAATCATTTTGTGGGACAAGTTCCAAGTCTAGGGAAACTCCAAGATCTATATTTTCTAAATTTTGAAATGAACTTTTTGGGTGACAATTCAACTAAAGATTTGGATTTTTTAAAAACATTGACAAATTGTAGCAAGCTACAAGTAGTTTGTATTGTTAGTAATAATTTTGGAGGTGTCCTTCCAAATTCGGTTGGAAATTTATCCTCTCAACTTAGTTACCTACTATTTGGGGATAATCAGATAAAAGGAAAAATTCCAGGAGAGTTAGGAAATTTAATAAACTTAAATCTCTTGGGCTTGGAGGAAAATAAGTTTGAAGGAATTATTCCACTTACTTTTGGAAAGTTCCAAAATATGCAAGTGTTAGATTTGCGGGCAAACAAGCTATCAGGAGCTTTACCTTTTTCCATAGGCAACCTCAGTCAATTGTTTGACTTGCGTATGTCAGAAAATAAGTTTGAAGGAAATATTCCTATAAGTATAGGAAAATGCCAAATGCTACAATATTTAAATCTTTCCCGAAACAACCTTCAGGGAGACATACCCTTAGAAGTTTTTAGAATTTCATCCTTGAGAAAGGGATTGGACTTGTCACGTAATTCACTGAGTGGTAGTCTACCTAATGAAGTGGGTTTGCTAAAAAATATTGAAAACTTAGATGTCTCGGAAAATTATCTGTCAAGTGAGATTCCTAGAACCATCGGTGAATGCATAAGCCTAGAAAACCTTCATTTACAAGGAAACTCCTTCCAAGGAACCATACCTTCCAATTTGGCATCTCTCAAAGGTCTTCAATATTTAGACCTGTCAAGAAATCGGTTGTCTGGATCAATTCCTGATGTTATGCAAGACATCCCTTATTTAAAACACTTGAATGTTTCTTTTAACATGTTGGAAGGCGAGGTCCCAATAGGCGGTGTGTTTGGAAATGCAACCCAAGTAGCAATTATTGGAAACATTAAGCTTTGTGGAGGAATTTCACAGTTGCATCTACCACCGTGCCCTGTCAAGAGTATGAAACACCCTAAAAAACACAGTTTCAAGTTGATAGCAGTGATAGTTAGTGTGGTTTTTCTTCTCCTCATACTTTCATTTATTATAACTATCTACTTGATGAGGAAAAGAAACCAAAAACCATCATTTGATTCACCAACAATTAATCAATTGGCTAAGGTTTCATACCAAGAATTATACCGAGGAACTGATGGGTTCTCGGATAGAAACTTGATCGGATCAGGAAGTTTTGGTTTTGTGTACAGAGGAAATCTTGTGTCACAAGATAATGTTGTTGCAGTAAAGGTATTGAACCTCCAAAAGAAAGGAGCACACAAGAGTTTCATTGCTGAATGTAATGCACTCAAAAGTATTAGACACCGTAATTTAGTTAAGATCTTAACATGTTGTTCTAGTACAGATTTCAAAGGTCAAGAATTTAAAGCTCTAGTTTATGATTACATGAAAAATGGAAGCTTAGAACAATGGTTGCATCCTGAGATTTCAAATCTAGAGAATCAAACATCATTGGACCTCACTCACAGAGTAAACATCATTACCGATGTTGCTTCAGCATTACATTATCTTCATCAAGAATGTGAACAGTTGATCCTTCATTGTGATCTAAAGCCAAGTAATGTACTTCTTGATGATGACATGGTTGCTCATGTGAGTGATTTTGGCATAGCGAGACTTGTCTCAGCCATTGAAGGTGCTTCTCATAAGGATACAAGTACAATTGGAATAAAAGGAACTGTTGGCTATGCTCCTCCAGAGTATGGAATAGGCTCTGAACTGTCAACATGTGGTGACATGTATAGCTTTGGAATTCTAATGTTGGAAATGCTTACCGGTAGAAGACCCACAAATGAAGTTTTTGAAGATGGCCAAAATCTGCATAACTTTGTTGCAAATTTGTTTCCTAGCAATCTTATGAACATTTTGGACCCTGGTCTTGTATCAAGAGATGCTGAAGTAGAAATACAAGATGGAAATCGTCATAATTTTACTCCAACCGTTGAGAAGTGCCTAGTTTCACTTTTTAGGATCGGACTTAATTGTTCAATAGAATCACCAATGGAACGGATGAATATTGTGGACGTCACTAAAGAGCTTAGCATAATTAGAAAAGAATTTCTCGCTGGTGTTCACACTTATAATTAG 3075 0.3623 MKHFSFLLPIFCYVYLYLFLLLTLNRTVSLALELGNQTDHLALLKFKESISSDPYRILDSWNGSLHFCSWHGITCNLMHQRVTKLELQGYKLHGSLSPYVGNLSRIRSLNLGNNSFFGKIPTELGHLSQLHRLFLTNNSFAGEILMNLTNYSKLNIVYLYGNKLTGKIPTEIGSLQKLRYMNIGQNNLTGQVPPSIGNLSSLIGFGVNYNNLEGEFPGEICHLKNLTLITMVVNNLSGRLPPCLYNMSSLTFFAITLNRFGGSLPPNMFQTLPNLQTFEIGGNEILGTIPTSISNASTLTLVELAENHFVGQVPSLGKLQDLYFLNFEMNFLGDNSTKDLDFLKTLTNCSKLQVVCIVSNNFGGVLPNSVGNLSSQLSYLLFGDNQIKGKIPGELGNLINLNLLGLEENKFEGIIPLTFGKFQNMQVLDLRANKLSGALPFSIGNLSQLFDLRMSENKFEGNIPISIGKCQMLQYLNLSRNNLQGDIPLEVFRISSLRKGLDLSRNSLSGSLPNEVGLLKNIENLDVSENYLSSEIPRTIGECISLENLHLQGNSFQGTIPSNLASLKGLQYLDLSRNRLSGSIPDVMQDIPYLKHLNVSFNMLEGEVPIGGVFGNATQVAIIGNIKLCGGISQLHLPPCPVKSMKHPKKHSFKLIAVIVSVVFLLLILSFIITIYLMRKRNQKPSFDSPTINQLAKVSYQELYRGTDGFSDRNLIGSGSFGFVYRGNLVSQDNVVAVKVLNLQKKGAHKSFIAECNALKSIRHRNLVKILTCCSSTDFKGQEFKALVYDYMKNGSLEQWLHPEISNLENQTSLDLTHRVNIITDVASALHYLHQECEQLILHCDLKPSNVLLDDDMVAHVSDFGIARLVSAIEGASHKDTSTIGIKGTVGYAPPEYGIGSELSTCGDMYSFGILMLEMLTGRRPTNEVFEDGQNLHNFVANLFPSNLMNILDPGLVSRDAEVEIQDGNRHNFTPTVEKCLVSLFRIGLNCSIESPMERMNIVDVTKELSIIRKEFLAGVHTYN 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06154 1024 Pfam Protein kinase domain 712 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06154 1024 FunFam LRR receptor-like serine/threonine-protein kinase EFR 681 791 - -
Vifa1g06154 1024 SUPERFAMILY Protein kinase-like (PK-like) 684 1009 IPR011009 -
Vifa1g06154 1024 Pfam Leucine rich repeat 545 604 IPR001611 GO:0005515
Vifa1g06154 1024 Pfam Leucine rich repeat N-terminal domain 37 76 IPR013210 -
Vifa1g06154 1024 Gene3D Transferase(Phosphotransferase) domain 1 792 1019 - -
Vifa1g06154 1024 SMART serkin_6 710 1017 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06154 1024 Gene3D Phosphorylase Kinase; domain 1 691 791 - -
Vifa1g06154 1024 Gene3D Ribonuclease Inhibitor 345 641 IPR032675 -
Vifa1g06154 1024 PANTHER OS04G0122200 PROTEIN 227 1016 - -
Vifa1g06154 1024 Gene3D Ribonuclease Inhibitor 161 266 IPR032675 -
Vifa1g06154 1024 FunFam LRR receptor-like serine/threonine-protein kinase EFR 342 646 - -
Vifa1g06154 1024 Gene3D Ribonuclease Inhibitor 267 344 IPR032675 -
Vifa1g06154 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 841 853 IPR008271 GO:0004672|GO:0006468
Vifa1g06154 1024 SUPERFAMILY L domain-like 37 331 - -
Vifa1g06154 1024 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 75 341 - -
Vifa1g06154 1024 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 792 1021 - -
Vifa1g06154 1024 SUPERFAMILY L domain-like 347 630 - -
Vifa1g06154 1024 Gene3D Ribonuclease Inhibitor 38 153 IPR032675 -
Vifa1g06154 1024 ProSiteProfiles Protein kinase domain profile. 710 1017 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06154 1024 ProSitePatterns Protein kinases ATP-binding region signature. 716 739 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06154 Vifa-Chr1 962012235 962015591 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06154 36 1022 Receptor kinase-like Gene Family AT3G47570 46.092 0.0 852
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vifa1g06154 Pkinase 6.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06154 - - gmx:100785561 1290.4