Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06153 ATGGTGAAGTCGTTCACGGCATTAATAGCGTCGGTGGGCAGCGGTGGGCGTCGTGGCGACGGTGAGACGTTGACGGTGTTGGAGTCGTTGACGATGTTGGCAGCGGTGGGTGTCGCGGCGAATGAAGTCGCGGAGAAATGGGTCGTAAAATGGAGGAGCTTGTTAAAATATCTTCTTTTGAAAGATAACTCCTTCAACAGAACAATACCACCCTCATTAGCTTCTCTCAAAGGTCTTCAATATTTAGATGTTTCAAAAAACCAATTGTCTGGATCGATTCCTGATGTTCTACAAAATATCTCTGGTCTAAAGCACTTAAATGTTTCCTTTAACATGTTGGAAGGTGAGGTTCCAACATATGGTGTCTTTAGAAATGCAACCCAAGTAGTAATGATCGAAAACAATAAGCTTTGTGGAGGTATTTCTCAGATGCTTTTACCAGCATGCTCCGTCAAGGATATGAAACAAACAAAACACCATAAGTTCATGTTGGTAGTTGTTGGTGTGCTTTTTCTTCTCACACTTTCAATTTTTCTAACTGTCTATTGGATGAGGAAAAGAAACCAAAAACGATCTTTTGATTCACCGATAATTGATCAACTAGAAAAGGTTTCATATCGAGACTTACATCAAGGAACCGATGGATTCTCAATTACAAACTTAATTGGATCAGGAAGTTTTGGTTCTGTGTACAAAGGAAATCTTGTGTCAGAAGACAATTTTGTTGCCATAAAGGTTCTGAATCTCCAAAAGAAGGGAGCTAACAAGAGTTTTATTCTTGAATGCAATGCACTCAAAAATATTAGACACCGAAATTTGGTTAATATTATAACATGTTGTTCTAGTTCAGATTCTAAAGGTCAAGAATTTAAAGCTCTAGTTTTTTATTACATGAAAAATGGAAGCCTAGAACAATGGTTGCATTCAGAGATTTTAAATGCAAAAAATCAAACAACATTGAACCTTGCTCGTAGAGTCAATATCATTACCGATGTTGCTTCGGCATTACATTATCTTCATCAAGAATACTATGGAATGGGCTCTAAAGTGTCAACATGTGGTGACATGTATAGTTTTGGAATCCTATTGTTGGAAATACTTACTGGTAGAAGACCCACAAATGAAGTTTTTGAAGATGGCCAAAATCTGCATAACTTTGTCCCAAATTTGTTTCCTAACAATATTATGAACATATTGGAACCGGGTCTTGTATCAAGATATGCAGGAGTAGAAACACAAGATGGAAATTGTGAGAATTTTAATCCAACCGTTGAGGAGCGCCTAGTTTCACTTTTTAGGATTGGACTTAATTGTTCAATAGAACAACCATAG 1332 0.3746 MVKSFTALIASVGSGGRRGDGETLTVLESLTMLAAVGVAANEVAEKWVVKWRSLLKYLLLKDNSFNRTIPPSLASLKGLQYLDVSKNQLSGSIPDVLQNISGLKHLNVSFNMLEGEVPTYGVFRNATQVVMIENNKLCGGISQMLLPACSVKDMKQTKHHKFMLVVVGVLFLLTLSIFLTVYWMRKRNQKRSFDSPIIDQLEKVSYRDLHQGTDGFSITNLIGSGSFGSVYKGNLVSEDNFVAIKVLNLQKKGANKSFILECNALKNIRHRNLVNIITCCSSSDSKGQEFKALVFYYMKNGSLEQWLHSEILNAKNQTTLNLARRVNIITDVASALHYLHQEYYGMGSKVSTCGDMYSFGILLLEILTGRRPTNEVFEDGQNLHNFVPNLFPNNIMNILEPGLVSRYAGVETQDGNCENFNPTVEERLVSLFRIGLNCSIEQP 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06153 443 Pfam Leucine rich repeat 55 113 IPR001611 GO:0005515
Vifa1g06153 443 ProSiteProfiles Protein kinase domain profile. 216 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06153 443 Gene3D Ribonuclease Inhibitor 23 158 IPR032675 -
Vifa1g06153 443 Gene3D Transferase(Phosphotransferase) domain 1 344 443 - -
Vifa1g06153 443 FunFam LRR receptor-like serine/threonine-protein kinase EFR 186 297 - -
Vifa1g06153 443 SUPERFAMILY Protein kinase-like (PK-like) 191 385 IPR011009 -
Vifa1g06153 443 Gene3D Phosphorylase Kinase; domain 1 197 297 - -
Vifa1g06153 443 Gene3D Transferase(Phosphotransferase) domain 1 298 343 - -
Vifa1g06153 443 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 48 141 - -
Vifa1g06153 443 Pfam Protein tyrosine and serine/threonine kinase 218 342 IPR001245 GO:0004672|GO:0006468
Vifa1g06153 443 SUPERFAMILY L domain-like 53 322 - -
Vifa1g06153 443 PANTHER OS04G0122200 PROTEIN 53 341 - -
Vifa1g06153 443 ProSitePatterns Protein kinases ATP-binding region signature. 222 245 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06153 Vifa-Chr1 961729617 961732612 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06153 332 443 Receptor kinase-like Gene Family AT3G47570 35.714 4.69e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vifa1g06153 PK_Tyr_Ser-Thr 1.2e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06153 - - mtr:11405832 522.316