Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06152 ATGTTTCCTACATTTTCATTTTGGTTTCTTTTACTCCTTATTTTCAACTTCTGGCCGAAAACAATTGCATTCACCTTAGGAAACCAGACTGATCATTTAGCATTGCTCAAATTCAAGCAGTTAATAACCAATGACCCATATGGAATCCTTGATTCTTGGAATGGTTCGAGCCATTTCTGCAATTGGCATGGAATTACATGCAATCTGAAGCATCAAAGAGTTACAAAACTAAACTTACCTGGATACAAGCTGCATGGATCCTTATCTTCTCATGTGGCTAATCTCTCTTTTTTGAAGATTGTCAACCTTGCAGACAACAAGTTCTTTGGAATAATCCCACAACAGTTCGGTAACTTGTTAGAATTACGAGGACTCTATCTCACCAATAACTCGTTTGATGGAAAAATTCCTATAAACTTGACAAATTGTTACAATCTTATATACTTAAACTTGAGACGAAACAATTTGATTGGAAAAATACCAATTGAAATTGGCTTTCTTCAAAAGCTTCAAAAATTGATTGTTAGCAGGAACAATTTGATCGGAGGAGTCCCAGCAAGCATAGGGAATCTTTCATTATTAACAGGTCTTTCAGTTTCTTATAACAACTTAGAGGGAGATATTCCACAAGAAATATGCCGCCTCAAAAACTTGACAGAGATAGTGTTATCAGTCAACTATTTGTCTGGCGCATTTCCTCTTTGTCTATATAATATGTCATCTCTTACTATGATCTCAGCTACTCAAAATCAGTTTAGCGGCTCTCTTCCACCCAACATGTTTAACAACCTCCCTAATCTCCAGAAGTTTTACTTTGGTGGTAATAATTTCTCAGGTCTAATGCCCATTTCTATTGCAAATGCTTCTACCCTGACGGTGCTTGATGTCAGCAAAAACTATTTTGTCGGAAAAGTTCCAAGTCTTGGGAGGCTAAAATATCTTTGGTTGTTAAATTTGGAAATAAATAATTTTGGTTACAATTCACGTAATGACTTAGAATTTTTGAAATCATTGATAAACTGTAGTAAGTTGGAAGTGGTTTCTTTATCCTATAATAATTTTGGAGGTAGTTTGTCAAGTTCCATAGGCAACTTATCCACCCAACTTAGTCAACTATATCTTGGGTATAATCAAATATATGGGAAAATTCCTTTAGAATTAGGAAATCTAAATAGTTTAATTCTCTTAAACATGCAAGATAATCATTTTGAAGGGAGAATTCCTTCATCATTCAGGAAGTTTCAAAAGCTGCAAGTGTTAAATTTGGGTGGGAACAGGTTGTCAGGTGAAATACCATCCTTTATAGGAAACCTCAGTCGGCTATATCGTTTGACTTTAGGAAAAAATATGTTAGAGGGAACTATTCCTTCAAGTATAGGGAACTGCCAAAACATACAAATGTTAGACCTTTCAAAAAACAACCTTAGAGGAGTCATACCCCCAGAGGTCTTCAGCATTTCATCTTTAACAATAGGATTGTTCTTATCACAAAACTTTTTGAGTGGCAGCCTACCTGATGAACTCGGCCATCTACAAAATATTGTGACGATTGATGTCTCTAAAAATCGTTTGTCTGGTAAAATTCCTATAACCGTGGGGAAATGCATATGCTTAGAATACCTTATTTTGGCAGGGAATTCATTCAATGGAAGCATACCCTACTCTTTAGAATCTCTCAAAGTTCTTAAAGTGTTGGATCTTTCTAGAAATCAACTATCTGGGTTGATTCCAAAAGCTTTGCAAAATATTCCTTTCTTTGAATATTTCAATGTATCGTTCAATATGTTGGAAGGAGAGGTACCAACTAAAGGTGTCTTTAGAAATGCAAGTGCATTTACAGTGATTGGAAACAATAAGCTTTGTGGAGGAATTTTGGAGTTAGATCTACCACCATGCCCTATTAAAGGTACAAAACACTATAATTTGAAGTTGATGGCAGGGATAGTTAGTGTAGTTTCTTTTCTTTTCATTATGCTATCTATTCTGATAATCTATTGGAGGAGGGGAACGATAAAAAAACCATCTTTTGATTCACCAATAATTGATCAGATGATTAAGGTTTCGTACCAAAACCTACACAGGGCAACCAATGGGTTCTCGAAAAGCAACTTGATAGGATCTGGAAATTTTGGTTCTGTCTACAAAGGAACACTTGAGTCGATAGAAGGATTTGTTGCCATAAAAGTCCTAAACCTTACAAAGAAGGGATCTCACAAGAGTTTCATTGCTGAATGTAACGCGCTAAAAAATATTAGACACCGGAATCTAGTAAAAATTCTGACATGCTGTTCCAGCACAGATTATAAAGGAGGTGAGTTTAAAGCTCTTGCATTTGAGTACTTGAGAAATGGAAACTTAGAAAGTTGGTTGCATCCCACAACAGAAATGACAGATGAGCCCAGATCATTAAATCTAGAGCAAAGGTTCAATATTATTATTGATGTTGCGTCAGCGTTTTGTTATCTTCACTACGAATGCGAGCAACCTGTCATTCATTGTGATTTAAAGCCAGCAAATGTTCTTCTTAATGACTCCCTGGTAGCACAAGTGAGTGATTTTGGCTTAGCAAGGTTGGTCTCAAGTGCCGGTATCTCTCTGAAGCAAAGTAGCACAATTGGAGTGATGGGGACAGTTGGCTATGCACCCCTAGAGTACGGAATGGGTTTGGAAGTGTCGATTGAAGGCGACACGTATAGTTTTGGAATACTGGTATTAGAAATGTTAACTGGAAGGAGACCCACAGATGAAATGTTTAAAGATGATCATAATCTCCATAATTATGTGAAACACTCAATTCCAAATCACCTTTTCCAGATTGTGGACCGGTCTCTTCTCCCCATTGAATTAGAAAACAATAGTGAGAATGGGAACTCTTGTAGTATAGATCCTAATGTAGAAAAATGTCTACTTTCAATATTTAGGATTGCACTTTCTTGTTCAATGGAATCACCAAAAGAAAGAATGAACATGGTCGATGTTATAAGGGAACTCAACATCATTAAAAGTTTCTTTCCTACCGAGGTTCAACGAAGGCATGGTGCATTACAACCACAAATCACATGA 3063 0.364 MFPTFSFWFLLLLIFNFWPKTIAFTLGNQTDHLALLKFKQLITNDPYGILDSWNGSSHFCNWHGITCNLKHQRVTKLNLPGYKLHGSLSSHVANLSFLKIVNLADNKFFGIIPQQFGNLLELRGLYLTNNSFDGKIPINLTNCYNLIYLNLRRNNLIGKIPIEIGFLQKLQKLIVSRNNLIGGVPASIGNLSLLTGLSVSYNNLEGDIPQEICRLKNLTEIVLSVNYLSGAFPLCLYNMSSLTMISATQNQFSGSLPPNMFNNLPNLQKFYFGGNNFSGLMPISIANASTLTVLDVSKNYFVGKVPSLGRLKYLWLLNLEINNFGYNSRNDLEFLKSLINCSKLEVVSLSYNNFGGSLSSSIGNLSTQLSQLYLGYNQIYGKIPLELGNLNSLILLNMQDNHFEGRIPSSFRKFQKLQVLNLGGNRLSGEIPSFIGNLSRLYRLTLGKNMLEGTIPSSIGNCQNIQMLDLSKNNLRGVIPPEVFSISSLTIGLFLSQNFLSGSLPDELGHLQNIVTIDVSKNRLSGKIPITVGKCICLEYLILAGNSFNGSIPYSLESLKVLKVLDLSRNQLSGLIPKALQNIPFFEYFNVSFNMLEGEVPTKGVFRNASAFTVIGNNKLCGGILELDLPPCPIKGTKHYNLKLMAGIVSVVSFLFIMLSILIIYWRRGTIKKPSFDSPIIDQMIKVSYQNLHRATNGFSKSNLIGSGNFGSVYKGTLESIEGFVAIKVLNLTKKGSHKSFIAECNALKNIRHRNLVKILTCCSSTDYKGGEFKALAFEYLRNGNLESWLHPTTEMTDEPRSLNLEQRFNIIIDVASAFCYLHYECEQPVIHCDLKPANVLLNDSLVAQVSDFGLARLVSSAGISLKQSSTIGVMGTVGYAPLEYGMGLEVSIEGDTYSFGILVLEMLTGRRPTDEMFKDDHNLHNYVKHSIPNHLFQIVDRSLLPIELENNSENGNSCSIDPNVEKCLLSIFRIALSCSMESPKERMNMVDVIRELNIIKSFFPTEVQRRHGALQPQIT 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06152 1020 Pfam Leucine rich repeat 538 596 IPR001611 GO:0005515
Vifa1g06152 1020 Gene3D Ribonuclease Inhibitor 326 632 IPR032675 -
Vifa1g06152 1020 PANTHER OS04G0122200 PROTEIN 99 213 - -
Vifa1g06152 1020 Gene3D Transferase(Phosphotransferase) domain 1 781 1011 - -
Vifa1g06152 1020 FunFam LRR receptor-like serine/threonine-protein kinase EFR 671 780 - -
Vifa1g06152 1020 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Vifa1g06152 1020 SUPERFAMILY L domain-like 29 324 - -
Vifa1g06152 1020 SUPERFAMILY Protein kinase-like (PK-like) 675 999 IPR011009 -
Vifa1g06152 1020 Gene3D Ribonuclease Inhibitor 28 187 IPR032675 -
Vifa1g06152 1020 SMART LRR_typ_2 264 287 IPR003591 -
Vifa1g06152 1020 SMART LRR_typ_2 95 118 IPR003591 -
Vifa1g06152 1020 SMART LRR_typ_2 191 215 IPR003591 -
Vifa1g06152 1020 SMART LRR_typ_2 559 582 IPR003591 -
Vifa1g06152 1020 SMART LRR_typ_2 414 438 IPR003591 -
Vifa1g06152 1020 SMART LRR_typ_2 239 263 IPR003591 -
Vifa1g06152 1020 SMART serkin_6 699 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06152 1020 Gene3D Phosphorylase Kinase; domain 1 680 780 - -
Vifa1g06152 1020 Pfam Protein tyrosine and serine/threonine kinase 702 929 IPR001245 GO:0004672|GO:0006468
Vifa1g06152 1020 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 781 1010 - -
Vifa1g06152 1020 ProSiteProfiles Protein kinase domain profile. 699 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06152 1020 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 67 332 - -
Vifa1g06152 1020 Pfam Leucine Rich Repeat 416 438 IPR001611 GO:0005515
Vifa1g06152 1020 FunFam LRR receptor-like serine/threonine-protein kinase EFR 333 638 - -
Vifa1g06152 1020 SUPERFAMILY L domain-like 367 622 - -
Vifa1g06152 1020 Gene3D Ribonuclease Inhibitor 261 311 IPR032675 -
Vifa1g06152 1020 Gene3D Ribonuclease Inhibitor 192 260 IPR032675 -
Vifa1g06152 1020 ProSitePatterns Serine/Threonine protein kinases active-site signature. 830 842 IPR008271 GO:0004672|GO:0006468
Vifa1g06152 1020 ProSitePatterns Protein kinases ATP-binding region signature. 705 728 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06152 Vifa-Chr1 961346916 961350083 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06152 20 1004 Receptor kinase-like Gene Family AT3G47570 44.500 0.0 795
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vifa1g06152 PK_Tyr_Ser-Thr 2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06152 - - gmx:100792724 1233.78