Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06147 ATGAATTATTTTTCTCTCTTCTCACCTATGCTTTTATACCTTCATCTGTTTTTTCTGTTTACCCTATATTTAATGTGCTTTGGCCCAAACAAAATTGTGGCAGTGCCATTAGGAAATCAAACTGATCATTTAGCATTGCGCAAATTCAAAGAATCAATAACCAATGATCCATATAGAACTCTTGAATCTTGGAATTCTTCCATCCACTTCTGTAAATGGCGTGGAATCACATGCAGCCCCATGCATCAAAGAGTTATTGAGTTGAACTTGAAAGGATATGAGTTGCATGGATCTTTATCTCCCCATGTTGGCAATCTCACTTTTCTGATAAATCTCAACCTTAGCAACAACAGCTTCTTTGGAGAAATTCCACATGAGTTAGGTAAGTTGCTACAATTGCAACAACTTCGTCTCAACAATAACTCATTCGCAGGTGAAATTCCTACAAACTTGACATATTGCTCCAATCTCACGGACTTGTATTTGCATAAGAACAATCTAATTGGCAAAATACCAATTGGAATTGGCTCTTTGAAAAAGCTTCAATCATTTAGTGTTTGGCGAAACAATTTAACTGGGGGAATCTCTTCATTCATAGGGAATCTTTCAAGCTTAGCGCGTTTTTCATGTGATGATAACAACATACAAGGAGATATTCCACGTGAAATATGTCGCCTCAGAAACTTGTCATTTTTACTTTTGGGATTGAACAAATTGTCTGGTACCATTCCTTCTTGTCTTTACAATATCTCATCACTTACTGTATTTTCTGTGACAGAGAATAACTTTCATGGCTCTCTCCCACTCAACACTTTCAACACCCTCCCCAATCTCCAAACTTTTTTCATCGGACAAAATCAATTTTCAGGCCCAATCCCTACTTCCATAATAAACGCATCTGCGATTATATGGTTTGATATTGGTACAAATTATTTTGTAGGACAAGTTCCAAGTTTAGGAAGACTAGAAAATTTACATTTTCTGAATTTGGAAGGTAACAATTTAGGTAGCAATTCGACTAAGGATTTGGAGTTTTTTAAAACTTTGACAAACTGTAGTGTGTTGTATGAGTTTTCTATTTGCTGTAATAACTTTGGAGGCATTCTACCAAATTATATAGGCAATTTATCCTCTGAGCTTGCAATACTAGATCTTGCAAATAATAGGATATCAGGAAAAGTTCCGGCTGAATTAGGATCTCTAGTTGGCTTAATTAATTTGAACATGGCCTATAACCAATTTGTAGGAAATATTCCATCTACTTTTGGGAAGTTTCGAAAGATGCAAAAGTTAATGTTGAGCGGAAACAAGTTTTCTGGAGATATACCACAACTTATAGGCAACCTTAGTCAATTGTATTATTTAGATTTACATCTTAATATGTTTGAAGGAAATATTCATCCAAGCATAGAAAACTGTCAAAAGTTACAATATCTAGACATTTCACATAATAAGCTTAGAGGAACCATCCCTATAGAGGTTTTTAATCTTTTTTCCTTGTCAAATTTACTTGACTTGTCACATAACTCTTTGAGAGGTAGCTTACCAAGAGAAGTGGGTATGCTAACAAATATCGGTTGGTTAGATGTCTCTGAGAATTGTCTATCCGGTGATATTCCTATAACTATAGGTAAATGCATAAGTTTAGAACACCTTGACTTGCAAGGGAACTCCTTCAACGGAACAATACCATCTTCTTTGGCTTTTCTCAGAGGTCTTCAATATTTAGACCTTTCAATAAATCAATTGTCTGGATCGATCCCGGATGTTTTACAGAATATTCCTAGTTTAAAACAGTTGAATATTTCTTTTAACATGCTGGAAGGTGTGGTACCTACTCACGGTGTCTTTGGAAATGCAACCCAAGTAGGATTGGTTGGAAACAAAAAGCTTTGTGGAGGTATTTCAAAGTTGTGTCTACCAGCATGCCCGGTCAAGGATAAGAAACACACAAAACACAATAAGTTCATGTTGGTAGCTGTTAGTGTGGTTTCTTTTCTTGTCATACTTATTTTTGTTATAACTATCTACTCGATGCGAAAAAGAAACCAAAAACGATTATTTGATTCACCAACAATTCTTCAGCTAGATAAGGTTTCCTACCAAGACTTGCATCGAGGAACGGATGGGTTCTCAGCTAATAACTTGATCGGATCAGGAAGTTTTGGTTGTGTGTACAGAGGTAGTCTTGTGTCAGAAGATAATGTTGTTGCCATAAAGGTCCTGAATCTCCAAAAGAAGGGAGCACACAAGAGTTTTATTCTTGAATGCAATGCACTCAAAAATATTAGACACCGAAATTTAGTTAAGATTATAACATGTTGCTCTAGTTCAGATTATAAGGGTCAAGAATTTAAAGCTCTAGTTTTTGATTACATGAAAAATGGAAGCTTAGAGCAATGGTTGCATCCTGAGATTTTAAATGAAGAGCATCAAGCAACATTGGACCTCAGTCATAGATTAAACATCATTATTGATGTTGCTTCAGCATTACATTATCTTCATCAGGAGTGTGAACAATTGATCCTTCATTGTGATCTAAAGCCAAGTAATGTCCTTCTTGATGATGACATGGTTGCTCATGTGGGTGATTTTGGCATAGCAAGACTTGTCTCAAACATTGGTGGTACCTCTCACAATGACACAAGTACAATTGGAATAAAAGGGACTGTTGGCTATACTCCTCCAGAGTATGGGATGGGCTCTAAAGTGTCTACACGTGGAGACATGTATAGTTTTGGAATCCTGATATTGGAAATGCTTACTGGTAGAAAACCTACGGATGAAGTTTTTGAAGATGGTGAAAATCTGCATGACTTTGTTGCAAATTCACTTCCTAGTAATCTTATCAATATTTTGGACCCAGGTCTTGTATCTAGAAATACAGAAGAAAAAATACAAGATGAAATTTGTGAGAATCTTATTCCAACTATTGATGAGGAGTGCTTAGTTTCACTTTTTAGGATTGGACTTAATTGTTCAATGGAACCACCAAAAGAAAGAATGAATATTGTAGATGTCACTAAAGAGCTTAGCATAGCCAGAAAAACTTTTTTCGCTGGTAAGATAAATTGA 3075 0.358 MNYFSLFSPMLLYLHLFFLFTLYLMCFGPNKIVAVPLGNQTDHLALRKFKESITNDPYRTLESWNSSIHFCKWRGITCSPMHQRVIELNLKGYELHGSLSPHVGNLTFLINLNLSNNSFFGEIPHELGKLLQLQQLRLNNNSFAGEIPTNLTYCSNLTDLYLHKNNLIGKIPIGIGSLKKLQSFSVWRNNLTGGISSFIGNLSSLARFSCDDNNIQGDIPREICRLRNLSFLLLGLNKLSGTIPSCLYNISSLTVFSVTENNFHGSLPLNTFNTLPNLQTFFIGQNQFSGPIPTSIINASAIIWFDIGTNYFVGQVPSLGRLENLHFLNLEGNNLGSNSTKDLEFFKTLTNCSVLYEFSICCNNFGGILPNYIGNLSSELAILDLANNRISGKVPAELGSLVGLINLNMAYNQFVGNIPSTFGKFRKMQKLMLSGNKFSGDIPQLIGNLSQLYYLDLHLNMFEGNIHPSIENCQKLQYLDISHNKLRGTIPIEVFNLFSLSNLLDLSHNSLRGSLPREVGMLTNIGWLDVSENCLSGDIPITIGKCISLEHLDLQGNSFNGTIPSSLAFLRGLQYLDLSINQLSGSIPDVLQNIPSLKQLNISFNMLEGVVPTHGVFGNATQVGLVGNKKLCGGISKLCLPACPVKDKKHTKHNKFMLVAVSVVSFLVILIFVITIYSMRKRNQKRLFDSPTILQLDKVSYQDLHRGTDGFSANNLIGSGSFGCVYRGSLVSEDNVVAIKVLNLQKKGAHKSFILECNALKNIRHRNLVKIITCCSSSDYKGQEFKALVFDYMKNGSLEQWLHPEILNEEHQATLDLSHRLNIIIDVASALHYLHQECEQLILHCDLKPSNVLLDDDMVAHVGDFGIARLVSNIGGTSHNDTSTIGIKGTVGYTPPEYGMGSKVSTRGDMYSFGILILEMLTGRKPTDEVFEDGENLHDFVANSLPSNLINILDPGLVSRNTEEKIQDEICENLIPTIDEECLVSLFRIGLNCSMEPPKERMNIVDVTKELSIARKTFFAGKIN 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06147 1024 ProSitePatterns Protein kinases ATP-binding region signature. 717 740 IPR017441 GO:0005524
Vifa1g06147 1024 Pfam Leucine rich repeat 548 607 IPR001611 GO:0005515
Vifa1g06147 1024 SUPERFAMILY L domain-like 40 335 - -
Vifa1g06147 1024 Pfam Leucine rich repeat N-terminal domain 40 79 IPR013210 -
Vifa1g06147 1024 SUPERFAMILY Protein kinase-like (PK-like) 688 1011 IPR011009 -
Vifa1g06147 1024 ProSiteProfiles Protein kinase domain profile. 711 1019 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06147 1024 Gene3D Transferase(Phosphotransferase) domain 1 793 1019 - -
Vifa1g06147 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 842 854 IPR008271 GO:0004672|GO:0006468
Vifa1g06147 1024 Pfam Protein kinase domain 713 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06147 1024 Gene3D Ribonuclease Inhibitor 340 643 IPR032675 -
Vifa1g06147 1024 FunFam LRR receptor-like serine/threonine-protein kinase EFR 682 792 - -
Vifa1g06147 1024 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 793 1023 - -
Vifa1g06147 1024 PANTHER OS04G0122200 PROTEIN 115 224 - -
Vifa1g06147 1024 Gene3D Ribonuclease Inhibitor 37 98 IPR032675 -
Vifa1g06147 1024 Gene3D Ribonuclease Inhibitor 99 339 IPR032675 -
Vifa1g06147 1024 Gene3D Phosphorylase Kinase; domain 1 693 792 - -
Vifa1g06147 1024 FunFam Leucine-rich repeat receptor protein kinase EMS1 150 246 - -
Vifa1g06147 1024 SMART serkin_6 711 1019 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06147 1024 FunFam Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 41 149 - -
Vifa1g06147 1024 SUPERFAMILY L domain-like 352 633 - -
Vifa1g06147 1024 FunFam LRR receptor-like serine/threonine-protein kinase EFR 341 649 - -
Vifa1g06147 1024 PRINTS Leucine-rich repeat signature 476 489 - -
Vifa1g06147 1024 PRINTS Leucine-rich repeat signature 570 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06147 Vifa-Chr1 960612729 960615896 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06147 39 1021 Receptor kinase-like Gene Family AT3G47570 44.177 0.0 800
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vifa1g06147 Pkinase 6.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06147 - - gmx:100801459 1205.66