Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06137 ATGAAGCCTTATATTTTCTTTTTACCTATGTCTTGCTATTTATACCTTCATCTCTTTACCTTAACCTTAATGTTCTTAGACCCAAACACAACTGTCACAATAGCACTAGGAAACCAAGCTGACCATTTGGCATTACTCCAATTCAAGCAGTCGATATCTAGCGATCCATATGGTATCTTAGATTCCTGGAACAGTTCAGCCCACTTTTGCAAATGGAATGGAATCATATGTAGTCCCAAGCATCAAAGAGTAACAGCCTTGATGTTGCAAGGATACAATTTGCATGGATCCATATCTCCATATGTTGGCAATCTCTCTCATATGAGGTTCCTCAACCTTGAAAACAATAGCTTCAACAGAAACATTCCACAAGAATTCGGCCGTTTGTCACGATTAAGGGTTCTCCGTCTAGACAATAACTCGTTGGCCGGAGAATTTCCTATGAACTTGACAAAGTGCTCCGAGCTCAAAGGAGTACACTTAGCGGGAAACAATCTTATTGGAAAAATACCTAGTCAAATAGGTTCTCTTCAAAAGCTTCAATATATGTTTATTGGTAGAAACAATTTTTCTGGAAAAATCCCACCATCCATAAGGAATCTTTCATCCCTTATTTTTTTTGCGACTGGCTATAATAACTTGAAGGGAAATCTTCCACAAGAAATGTGCAACCTAAAACAGTTGAAGACACTATCAATGCATGCCAACAAGTTGTCTGGTACATTTCCTTCTTGTCTTTATAATATGTCATCTCTTGTAGCGATCTCAGCTGGAGCTAATAACTTTACTGGCTCTCTTCCATCCAATATGTTCCACACCCTTCTCAATCTCAAATATTTTGGCGTTGGAGGGAATCAAATCTCAGGTTTAATCCCTATTTCCATTTCAAATGCTTCTATTTTGACATTATTTGATATAAGTGAAAACCATTTTGTCGGACAAGTTCCAAGTCTAGGGAAGATACAAAGTCTTTGGTGGCTGAATTTGGAGTTCAACAATATTGGCGACAATTCAACAAGTGATTTGGAATTTTTAAAATCATTGACAAACTCTAGTAATTTGGAAACACTCTCTCTATCTTATAATAATTTTGGAGGTAGTTTGGAAATGTCTATAGGAAACTTATCCACCGTACTTAGTCTATTTTATATTGGAGGTAACCAAATATATGGAAAAATTCCTATAGAATTAGGAAATCTAATTAGCTTGAGTCTCTTATCCATGGAAGATAACCATTTGGAAGGAACAATTCCAACTAGTTTTGGGAAGCTTCAAAAGATACAAAGGCTAAATTTGGGCGAAAACAGGTTATCAGGGGATATACCAACATCCATAGGCAATCTCAGTCAGTTGTATTTTTTGAGACTAGAAGAGAATATGTTGGAAGGATATATTCCTCCAAATATTGGGAATTGTCAAATGTTACAATACTTAATCCTTTCACAAAACAACCTGACAGGAGTCATACCCTTAGAGACTTTTAGTATTTCGTCTTTGACAAATTTATTGGATTTGTCTCAAAACTCACTGAGTGGTAGTTTACCAAAGGAAGTGGGTATGCTAAAAAATATCAATGAACTAGATGTCTCTAAGAATCATTTGTCTGGTGACATTCCTGAAACTATTGGCGAGTGTACAAGCTTAGCAAGCCTTCAATTGCAAGGAAACTCCTTCAATGGAACAATACCATCTTCTTTGGCTTCTCTCAAAGGTCTTCGATATTTAGACCTTTCCAGTAATCAATTGTATGGACCAATTCCCGAGGTTATGAAGAATATCTCCGGCTTAGAATACTTGAATGTTTCTTTTAACATGCTGGAAGGTCAGGTGCCAACAAAAGGTGTCTTTGGAAATGCAACCCAAATAGCATTGATTGGTAACAATAAACTTTGTGGAGGTATTTCAAAACTGCATCTACCATCATGCCCTATCAAAAGTAAGAAGCACACAAAACACCATAAACTCAGATTGGTAGCAGTGATAGTTAGTGTGATTTCTTTTCTTATACTGTCATTTATTATAACTATTTATTTCATGAAGAAAAGAAACAAAAAACAATCATCTGATTCACCAACAATTGACCACCTAGCTAAGGTTTCGTACCAAGAATTATACCAAGGAACTGATGGATTCTCGACTATAAACTTGATCGGATCAGGAAGTTTTGGTTCTGTGTACAAAGGAAATCTTGTGTCTGAAGATAATGTTGTTGCCGTAAAGGTCTTGAACCTCCAAAAGAAAGGAGCACCCAAGAGTTTCATTGTTGAATGTAATGTACTCAAAAACATAAGACACCGGAACTTAGTTAAGATTTTAACATGTTGTTCTGGTACAGATTACAAGAATCAAGAATTCAAAGCTCTAGTTTTTGAGTACATGAAAAATGGAAGCTTAGAACAGTGGTTGCATCCTGAAATTTTAAATGTTGAGCATCCAATAACATTGGACCTTGGTCATAGATTAAACATCATTATCGATGTTGCTTCAGCATTACATTATCTTCATCAAGAATGTCATCAATTGGTCGTTCATTGTGATCTAAAGCCAAGCAACGTCCTTCTTGATGATGACATGGTTGCTCATGTGGGTGATTTTGGCATAGCAAGACTTGTCTCAGCCATTGGTGGTACATCTCATTCAAATACTAGCACAATTGGAATCAAAGGAACCATTGGTTATGCTCCTCCAGAGTATGGAATGGGTTCTGAAGTGTCTACATGTGGTGACATGTATAGCTTTGGAATTCTTGTGTTGGAAATGCTTACGTCTAGAAGACCCACTGATGATGTTTTGGAAGATGGTCAAAATCTGCATGAATTTGTTGCAATTTCATTTCCTGATAATCTTATAAAGATTTTGGATAAAAATCTTGTATTAAGAGATGCAGAAGTAGAAACACAAGATCGAAATCGCGACAATCTCCTTCAAACTTTAGATGGGTGCTTAGTTTCACTCTTTAGGATTGGACTTATTTGCTCAATGGAATCACCAAATGAAAGAATGAGTATTGTGGAAGTCACTAGAGAGCTTAGCATAATCAAAAAGGCTTTTTTCACTGGTGTTAGACACTCATAA 3075 0.3639 MKPYIFFLPMSCYLYLHLFTLTLMFLDPNTTVTIALGNQADHLALLQFKQSISSDPYGILDSWNSSAHFCKWNGIICSPKHQRVTALMLQGYNLHGSISPYVGNLSHMRFLNLENNSFNRNIPQEFGRLSRLRVLRLDNNSLAGEFPMNLTKCSELKGVHLAGNNLIGKIPSQIGSLQKLQYMFIGRNNFSGKIPPSIRNLSSLIFFATGYNNLKGNLPQEMCNLKQLKTLSMHANKLSGTFPSCLYNMSSLVAISAGANNFTGSLPSNMFHTLLNLKYFGVGGNQISGLIPISISNASILTLFDISENHFVGQVPSLGKIQSLWWLNLEFNNIGDNSTSDLEFLKSLTNSSNLETLSLSYNNFGGSLEMSIGNLSTVLSLFYIGGNQIYGKIPIELGNLISLSLLSMEDNHLEGTIPTSFGKLQKIQRLNLGENRLSGDIPTSIGNLSQLYFLRLEENMLEGYIPPNIGNCQMLQYLILSQNNLTGVIPLETFSISSLTNLLDLSQNSLSGSLPKEVGMLKNINELDVSKNHLSGDIPETIGECTSLASLQLQGNSFNGTIPSSLASLKGLRYLDLSSNQLYGPIPEVMKNISGLEYLNVSFNMLEGQVPTKGVFGNATQIALIGNNKLCGGISKLHLPSCPIKSKKHTKHHKLRLVAVIVSVISFLILSFIITIYFMKKRNKKQSSDSPTIDHLAKVSYQELYQGTDGFSTINLIGSGSFGSVYKGNLVSEDNVVAVKVLNLQKKGAPKSFIVECNVLKNIRHRNLVKILTCCSGTDYKNQEFKALVFEYMKNGSLEQWLHPEILNVEHPITLDLGHRLNIIIDVASALHYLHQECHQLVVHCDLKPSNVLLDDDMVAHVGDFGIARLVSAIGGTSHSNTSTIGIKGTIGYAPPEYGMGSEVSTCGDMYSFGILVLEMLTSRRPTDDVLEDGQNLHEFVAISFPDNLIKILDKNLVLRDAEVETQDRNRDNLLQTLDGCLVSLFRIGLICSMESPNERMSIVEVTRELSIIKKAFFTGVRHS 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06137 1024 ProSitePatterns Protein kinases ATP-binding region signature. 717 740 IPR017441 GO:0005524
Vifa1g06137 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 842 854 IPR008271 GO:0004672|GO:0006468
Vifa1g06137 1024 ProSiteProfiles Protein kinase domain profile. 711 1018 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06137 1024 SUPERFAMILY Protein kinase-like (PK-like) 685 1011 IPR011009 -
Vifa1g06137 1024 SMART LRR_sd22_2 225 251 - -
Vifa1g06137 1024 SMART LRR_sd22_2 351 377 - -
Vifa1g06137 1024 SMART LRR_sd22_2 569 595 - -
Vifa1g06137 1024 SMART LRR_sd22_2 472 493 - -
Vifa1g06137 1024 SMART LRR_sd22_2 424 450 - -
Vifa1g06137 1024 SMART LRR_sd22_2 177 203 - -
Vifa1g06137 1024 SMART LRR_sd22_2 274 295 - -
Vifa1g06137 1024 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 793 1022 - -
Vifa1g06137 1024 Gene3D Ribonuclease Inhibitor 337 643 IPR032675 -
Vifa1g06137 1024 SMART serkin_6 711 1018 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06137 1024 SUPERFAMILY L domain-like 39 334 - -
Vifa1g06137 1024 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 78 343 - -
Vifa1g06137 1024 Pfam Leucine rich repeat N-terminal domain 39 78 IPR013210 -
Vifa1g06137 1024 SUPERFAMILY L domain-like 379 632 - -
Vifa1g06137 1024 Pfam Protein kinase domain 712 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06137 1024 FunFam LRR receptor-like serine/threonine-protein kinase EFR 344 648 - -
Vifa1g06137 1024 Gene3D Phosphorylase Kinase; domain 1 673 792 - -
Vifa1g06137 1024 PANTHER OS04G0122200 PROTEIN 224 1014 - -
Vifa1g06137 1024 FunFam LRR receptor-like serine/threonine-protein kinase EFR 681 792 - -
Vifa1g06137 1024 Gene3D Ribonuclease Inhibitor 34 97 IPR032675 -
Vifa1g06137 1024 Gene3D Ribonuclease Inhibitor 98 336 IPR032675 -
Vifa1g06137 1024 Gene3D Transferase(Phosphotransferase) domain 1 793 1019 - -
Vifa1g06137 1024 Pfam Leucine rich repeat 547 606 IPR001611 GO:0005515
Vifa1g06137 1024 Pfam Leucine rich repeat 402 461 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06137 Vifa-Chr1 958305527 958308828 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06137 38 1022 Receptor kinase-like Gene Family AT3G47570 45.436 0.0 828
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vifa1g06137 Pkinase 6.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06137 - - gmx:100801459 1272.69