Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06132 ATGAAGCCTTATATTTTCTTGTTACCCATGTCTTTGTATTTATACCTTCATCTCTTTACCTTATCCTTAATGTTCTTAAACCCAAACACAACCGTCACAATAGCACTAGGAAACCAAACCGATCATTTGGCATTACTCCAATTCAAGCAGTTGATATCTAGTGATCCTCATGGGATCTTAGATTCTTGGAACAGTTCAACCCACTTTTGCAAATGGAATGGAATCATATGTAGTCCCAAGCATCAAAGAGTAACAACCTTGATGTTGCAAGGACACAATTTGCATGGATCCATATCTCCATATGTTGGCAATCTCTCTCATATGAGGTTCCTCAACCTTGAAAACAACAGCTTCAACGGAAACATTCCACAAGAATTTGGTCGTTTGTCACGATTAAGGTTTCTCCTTCTACTCAACAACTCGTTGGATGGAGAATTTCCTCTGAACTTGACAAAGTGCTCTGAGCTCAAAGGAGTACACTTAGCCGGAAACAATCTTATTGGAAAAATACCTAGTCAAATTGGCTCTCTTCAAAAGCTTCAATATATGTTTATTGGTAGAAACAATTTCTCTGGAAAAATCCCGCTATCCATAAGGAATCTTTCATCCCTTGTTATTTTAAAGACCGGTTATAATAACTTGGAGGGAAATATTCCACAAGAAATGTGCCACCTAAAACAGTTGAGGAAACTAACAGTGCATGTCAACAAATTGTCTGGTGCCTTTCCCTCTTGTCTTTGTAATATTTCATCTCTTACTATGATCTCAGCTGGAGTTAATAACTTTACTGGCTCTCTTCCATCCAATATGTTCCACACCCTTTTCAATCTCAAATATTTTGGCATTGGAGGGAATCAAATCTCAGGGATGATACAAAGTCTTTGGTGGATCAATTTGGCTCTCAACAATATCGGCGACAATTCAACAATAGATTTGGATTTTTTAAAATCATTGACAAACTCTAGTAATTTGAAAACACTCTGTGTATCTTATAATAATTTTGGAGGTCGTTTGGGAAATTCTATAGGTAATTTATCCACCGTACTTAGTCTATTTTATATTGGAGGTAACCAAATATATGGAAAAATTCCTATAGAATTAGGAAATCTAATTAGCTTGAGTCTCTTAGCCATGGAAGATAACTATTTGGAAGGAACAATTCCGACAACCTTTGGGAAGTTTCAAAAGATACAAAGGCTAGAATTGGGTGGAAACAGGTTATCAGGGGATATACCAGCAACCATTGGCAATCTCAGTCAGCTGTATGATTTGGGACTAGATGACAATATGTTAGAAGGATATATTCCTCCAAGTATTGGAAATTGTCAAATGTTACAATACTTAACCCTTTCACAAAACATCCTGACAGGAGTCATACCCTTAGAGATTTTTAGTATTTCTTCTTTGACAAATTCTTTGGATTTGTCAAAAAACTCACTGAGTGGTAGCTTACCAAAAGAAGTTGGTATGCTAAAAAATATCAACGAACTAGATGTCTCTAAGAATCATTTGTCTGGTGACATTCCTGAAACTATTGGTGAATGTTTAAGCTTAGAAAGCCTTCAATTGCAAGGAAACTCCTTCAATGGAACAATACCATCTTCTTTGGCTTCTCTCAAAGGTCTTCGATATTTAGACCTTTCCAGTAATCAATTGTATGGACCAATTCCTGAGGTTATGAAGAATATCTCCGGCTTAGAATATTTGAATGTTTCTTTTAACATGTTGGAAGGTCAGGTGCCAACAAACGGTGTATTTGGAAATGCAACCCAAATAGCTTTGATTGGTAACAATAAACTTTGTGGAGGTATTTCAAAACTGCATCTACCACCATGCCCTATCAAAAGTAAGAAGCACACAAAACATCATAAACTCAGATTGGTAGCAGTGATAGTTAGTGTGATCTCTTTTCTTATACTGTCATTTATTATAACTATTTATTTCATGAAGAAAAGAAACAAAAAACAATCATCTGATTCACCAACAATTGACCACCTAGCTAAGGTTTCGTACCAAGAATTATATCAAGGAACTGATGGATTCTCGACTAGAAACTTGATCGGATCAGGAAGTTTTGGTTCTGTGTACAAAGGAAATCTTGTGTCTGAAGATAGTGTTGTTGCCGTAAAGGTCTTAAACCTCCAAAAGAAAGGAGCACACAAGAGTTTCATTGTTGAATGTAATGTACTCAAAAACATCAGACACCGGAACTTAGTTAAGATTTTAACATGTTGTTCTGGTACAGATTACAAGAATCAAGAATTCAAAGCTCTAGTTTTTGAGTACATGAAAAATGGAAGCTTAGAACAGTGGTTGCATCCTGAAATTTTAAATGTTGAGCATCCAATAACATTGGACCTTGGTCATAGATTAAACATCATTATCGATGTTGCTTCAGCATTACATTATCTTCATCAAGAATGTCATCAATTGGTCGTTCATTGTGATCTAAAGCCAAGCAATGTCCTTCTTGATGATGACATGGTTGCTCATGTGGGTGATTTTGGCATAGCAAGACTTGTCTCAGCCATTGGTGGTACATCTCATTCAAATACTAGCACAATTGGAATCAAAGGAACTATTGGCTATGCTCCTCCAGAGTATGGAATGGGTTCTGAAGTGTCCACATGTGGTGACATGTATACCTTTGGAATTCTTATGTTAGAAATGCTTACGGGCAGAAGACCCACTGATGAAGTTCTGGAAGATGGTCATAATCTGCATGAATTTGTTGCAGATTCATTCCCTGATAATCTTATAAAGATTTTGGATAAAAATCTTGTATCAAGAGATGCAGAAGTAGAAACACAAGATCGAAATCGCGACAATCTCCTTCCAACTTTAGATGGGTGTTTTGTTTCACTCTTTAGGATTGGACTTATTTGCTCAATGGAATCACCAAATGAAAGAATGAGTATTGTGGAAGTCACCAGAGAGCTTAGCATAATCAAAAAGGCCTTTTTCACTGGTGTTAGACACTCATAA 2985 0.3645 MKPYIFLLPMSLYLYLHLFTLSLMFLNPNTTVTIALGNQTDHLALLQFKQLISSDPHGILDSWNSSTHFCKWNGIICSPKHQRVTTLMLQGHNLHGSISPYVGNLSHMRFLNLENNSFNGNIPQEFGRLSRLRFLLLLNNSLDGEFPLNLTKCSELKGVHLAGNNLIGKIPSQIGSLQKLQYMFIGRNNFSGKIPLSIRNLSSLVILKTGYNNLEGNIPQEMCHLKQLRKLTVHVNKLSGAFPSCLCNISSLTMISAGVNNFTGSLPSNMFHTLFNLKYFGIGGNQISGMIQSLWWINLALNNIGDNSTIDLDFLKSLTNSSNLKTLCVSYNNFGGRLGNSIGNLSTVLSLFYIGGNQIYGKIPIELGNLISLSLLAMEDNYLEGTIPTTFGKFQKIQRLELGGNRLSGDIPATIGNLSQLYDLGLDDNMLEGYIPPSIGNCQMLQYLTLSQNILTGVIPLEIFSISSLTNSLDLSKNSLSGSLPKEVGMLKNINELDVSKNHLSGDIPETIGECLSLESLQLQGNSFNGTIPSSLASLKGLRYLDLSSNQLYGPIPEVMKNISGLEYLNVSFNMLEGQVPTNGVFGNATQIALIGNNKLCGGISKLHLPPCPIKSKKHTKHHKLRLVAVIVSVISFLILSFIITIYFMKKRNKKQSSDSPTIDHLAKVSYQELYQGTDGFSTRNLIGSGSFGSVYKGNLVSEDSVVAVKVLNLQKKGAHKSFIVECNVLKNIRHRNLVKILTCCSGTDYKNQEFKALVFEYMKNGSLEQWLHPEILNVEHPITLDLGHRLNIIIDVASALHYLHQECHQLVVHCDLKPSNVLLDDDMVAHVGDFGIARLVSAIGGTSHSNTSTIGIKGTIGYAPPEYGMGSEVSTCGDMYTFGILMLEMLTGRRPTDEVLEDGHNLHEFVADSFPDNLIKILDKNLVSRDAEVETQDRNRDNLLPTLDGCFVSLFRIGLICSMESPNERMSIVEVTRELSIIKKAFFTGVRHS 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06132 994 Gene3D Ribonuclease Inhibitor 152 228 IPR032675 -
Vifa1g06132 994 Pfam Protein kinase domain 683 905 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06132 994 SMART serkin_6 681 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06132 994 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 763 992 - -
Vifa1g06132 994 Gene3D Ribonuclease Inhibitor 40 151 IPR032675 -
Vifa1g06132 994 ProSiteProfiles Protein kinase domain profile. 681 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06132 994 Gene3D Phosphorylase Kinase; domain 1 643 762 - -
Vifa1g06132 994 FunFam Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 40 148 - -
Vifa1g06132 994 SUPERFAMILY L domain-like 39 347 - -
Vifa1g06132 994 FunFam Leucine-rich repeat receptor protein kinase EMS1 149 234 - -
Vifa1g06132 994 FunFam LRR receptor-like serine/threonine-protein kinase EFR 310 618 - -
Vifa1g06132 994 ProSitePatterns Protein kinases ATP-binding region signature. 687 710 IPR017441 GO:0005524
Vifa1g06132 994 Pfam Leucine rich repeat 517 576 IPR001611 GO:0005515
Vifa1g06132 994 Gene3D Ribonuclease Inhibitor 229 613 IPR032675 -
Vifa1g06132 994 ProSitePatterns Serine/Threonine protein kinases active-site signature. 812 824 IPR008271 GO:0004672|GO:0006468
Vifa1g06132 994 SUPERFAMILY L domain-like 349 602 - -
Vifa1g06132 994 SUPERFAMILY Protein kinase-like (PK-like) 655 981 IPR011009 -
Vifa1g06132 994 Gene3D Transferase(Phosphotransferase) domain 1 763 989 - -
Vifa1g06132 994 Pfam Leucine rich repeat N-terminal domain 39 78 IPR013210 -
Vifa1g06132 994 FunFam LRR receptor-like serine/threonine-protein kinase EFR 651 762 - -
Vifa1g06132 994 PANTHER OS04G0122200 PROTEIN 224 984 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06132 Vifa-Chr1 957867516 957870790 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06132 38 992 Receptor kinase-like Gene Family AT3G47570 44.835 0.0 801
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vifa1g06132 Pkinase 8.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06132 - - gmx:100785561 1229.93