Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06126 ATGAACAACATTAACGAAGATGCTTCCGCGCAAGATCTCGAACTTCAAAGCGATCACAGCTCCGATTACTTAGCTCAGCCTCAACCCCGCCGTCTACGCGGCTTCGCCGCCACGGCGGCGGGGACCAATTCCACCGGAAGGGGGAAAAAGGAGAGAGAGAAAGAAAAGGAACGTACGAAGCTCCGGGAGCGTCACCGTCGAGCCATCACCAGCCGAATGTTGGCTGGACTCCGCCAGTATGGTAATTTCCCTCTCCCGGCGCGTGCTGACATTAACGACGTACTCGCTGCTCTCGCGCGTGAAGCTGGTTGGATTGTTAACGCCGATGGAACTACCTATCGCCAGTGCTTACCTCCTTCTCAAATGGGATCATTTGCGGCTAAGTCAGTTGATAGTCAAGTATCTGGTGGTTCCTTGAGAACTTGTTCAGTTAAGGAAACACTAGAGAATCAGCCACCAGTACTTCGAATTGATGAATGCTTGTCTCCTGCATCTATTGATTCTGTTGTAATTGCCGAAAGGGACTCAAAGAATGGAAAATATGCAAGTGTAAGCCCCATCAATTCAGTTGACTGCTTGGAGGCTGATCAGCTTATGCAAGATATTCATTCCAGGGTGCATGAAAGTGACTTCAATTGCACACCTTATGTCCCTGTTTACATAAAACTTCCAGCTGGTATTATTAATAAATTTTGCCAGTTGATGGATCCTGAAGGCATTAGGCAAGAGCTAATCCATATTAAGTCCTTAAATATTGATGGTGTTGTTGTGGATTGTTGGTGGGGCATTGTTGAAGGCTGGAGCCCACAGAAATATGTGTGGTCTGGTTATAGGGAGCTTTTTAACATTATTAGAGAATTCAAGCTGAATTTACAGGTTGTTATGGCATTTCATGAATGTGGAGGGAAGGATTCTAGCGATGCACTGATTTCCCTCCCACAATGGGTTTTGGATATTGGAAAAGACAACCAGGACATATTTTTCACAGATCGTGAAGGACGGAGAAATACTGAATGCTTATCTTGGGGGATTGACAAGGAGAGGGTTCTCAAAGGAAGAACTGGAATTGAGGTTTATTTTGATATGATGAGAAGCTTTCGGACAGAGTTTGATGACCTGTTTACAGTAGGTTTAATTTATGCTGTAGAAGTTGGACTTGGAGCATCTGGGGAGCTGAAATACCCTTCTTTTTCAGAAAGGATGGGGTGGAGGTATCCTGGTATTGGTGAGTTTCAGTGCTATGATAAATACCTGCAACATAGTCTGCGCAAGGCAGCCAAACTACGCGGCCACTCTTCCTGGGCTAGAGGACCTGATAATGCTGGGCACTATAACTCTAAGCCACACGAGACTGGATTCTTTTGTGAACGAGGTGATTATGACAACTATTATGGACGTTTCTTCTTACATTGGTACTGCCAGAATTTAATAGATCATGCGGATAATGTTTTGTCTCTTGCAAGCCTTGCTTTTGAGGAAACAAAAATTATTGTCAAGGTTCCTGCTGTACACTGGTGGTACAAGACTCCTAGTCATGCAGCAGAGTTGACAGCGGGATATCACAACCCTACAAATCAGGATGGATACTCTCCGGTGTTTGAGGTTCTGAAAAAACACTATGTCACCATGAAATTTGTCTGCCTAGGATTTAATCTTTCCAACCAGGAAGCTAATGACTCATTGGTGGATCCAGAGGGATTGAGTTGGCAGGTAGTAAACTCAGCTTGGGAACGGGGATTGGCCACTGCTGGAGAGAACACACTCTTTTGTTATGATAGAGAAAGGTACAAGAGATTGGTTGAGACGGCAAAGCCTAGAAATGATCCTGATCAGCGGCACTTTTCGTTCTTTGTTCATCAGCAACCCTCTCTACTTCAGGGAAATGTTTGCTTGTCGGAATTGGATTTCTTCATCAAATGCATGCATGGTGAGATGACAGGGGATCTGTAA 1950 0.4482 MNNINEDASAQDLELQSDHSSDYLAQPQPRRLRGFAATAAGTNSTGRGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADINDVLAALAREAGWIVNADGTTYRQCLPPSQMGSFAAKSVDSQVSGGSLRTCSVKETLENQPPVLRIDECLSPASIDSVVIAERDSKNGKYASVSPINSVDCLEADQLMQDIHSRVHESDFNCTPYVPVYIKLPAGIINKFCQLMDPEGIRQELIHIKSLNIDGVVVDCWWGIVEGWSPQKYVWSGYRELFNIIREFKLNLQVVMAFHECGGKDSSDALISLPQWVLDIGKDNQDIFFTDREGRRNTECLSWGIDKERVLKGRTGIEVYFDMMRSFRTEFDDLFTVGLIYAVEVGLGASGELKYPSFSERMGWRYPGIGEFQCYDKYLQHSLRKAAKLRGHSSWARGPDNAGHYNSKPHETGFFCERGDYDNYYGRFFLHWYCQNLIDHADNVLSLASLAFEETKIIVKVPAVHWWYKTPSHAAELTAGYHNPTNQDGYSPVFEVLKKHYVTMKFVCLGFNLSNQEANDSLVDPEGLSWQVVNSAWERGLATAGENTLFCYDRERYKRLVETAKPRNDPDQRHFSFFVHQQPSLLQGNVCLSELDFFIKCMHGEMTGDL 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06126 649 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 460 479 IPR001554 GO:0000272|GO:0016161
Vifa1g06126 649 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 494 510 IPR001554 GO:0000272|GO:0016161
Vifa1g06126 649 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 511 522 IPR001554 GO:0000272|GO:0016161
Vifa1g06126 649 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 294 315 IPR001554 GO:0000272|GO:0016161
Vifa1g06126 649 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 272 290 IPR001554 GO:0000272|GO:0016161
Vifa1g06126 649 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 529 552 IPR001554 GO:0000272|GO:0016161
Vifa1g06126 649 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 251 265 IPR001554 GO:0000272|GO:0016161
Vifa1g06126 649 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 567 589 IPR001554 GO:0000272|GO:0016161
Vifa1g06126 649 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 387 409 IPR001554 GO:0000272|GO:0016161
Vifa1g06126 649 MobiDBLite consensus disorder prediction 1 59 - -
Vifa1g06126 649 Pfam BES1/BZR1 plant transcription factor, N-terminal 46 193 IPR008540 -
Vifa1g06126 649 SUPERFAMILY (Trans)glycosidases 211 645 IPR017853 -
Vifa1g06126 649 Gene3D Glycosidases 207 648 - -
Vifa1g06126 649 Pfam Glycosyl hydrolase family 14 233 608 IPR001554 GO:0000272|GO:0016161
Vifa1g06126 649 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 154 644 IPR001554 GO:0000272|GO:0016161
Vifa1g06126 649 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06126 Vifa-Chr1 957020917 957026110 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06126 59 645 Glycoside Hydrolase AT5G45300 68.761 0.0 851
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Vifa1g06126 Glyco_hydro_14 2.9e-85 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06126 K01177 - gmx:100777004 1164.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06126 1 957020917 957026110 Vifa1g06126 1 957020917 957026110 ECH