Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06121 ATGGGGTCTAGTAGTAGTAAAGGTGCTTCTTCTTCTTGTAGTTTACGAAAGAATCGATCCAAGAGACATAGAGGTTTTCCTTCTTATTGTCTTGGAACAACTTCTGGATCTCGTGACAGTGATAATGATGAACGGGTTTGTGATCAGAATAAAGTAAATGGAAGTGATGTTACATACACCAGCAGCAATGAAATTGACTCGGATGAAGCGAAATCAGAGTCTTTTAGAAAAGTTAAACCTGATGAGATACCTTGTATGCCTTCTAACATTGATCTTGATGAGTGGAGTCACACTGAATCCAGAACCAGTAGTATCCCAGCTCACGCTTCTTCAACTCAGTCCACGAATTCTATGAGTCGGTTCCTTTCTCGGTTTAGTCTCATTCCGGGTAATATAAGCTTCAGACTTAGCAGAACCACCAGTTTGGGGTCATCTCGACCTTGTCCTGATTCTTCGCAAAGTCTTTCTATGTTTAACAATGAAGACGAGCTTAGTCTCCATAATAGAAATCAAACTCAACAATATAGCGGCGGCAACGGGTCTTTTGTAAATCCAGTCCCTATACAGTATCATGGAGATGCTTCTAATAGTTTGAGTTCAAATGTCCCGATATTCGGTTTGGCTAGCAACTTGTCGAGCAGTCCTACGCTATCTCCTCTCGAAGATACAGTTAGAGATGGATATGACGCACGAGAGATGCTTGGCATGAACATGTTTTCTCCAAGAGTTAATACCGAGGCAGCAAATGTTATGGATAGACGAAATGGAGCTCGAGAGCCTGTTGACCGCAATGTTCGTTTCAGCCGAACTTTAAGTGTTGGAAGGCTTCGAGACAGAGTTCACCGCCGATCAGGATTGGCTGACTTCAACTTTTGCCCTCTGCAACAAGAGAGAGATGCTAGCGAGGATAGTGTAAGACAAGTAGGGGAGAGGGGTACAGGAGTGTCACCATCTGATCGAAACACTTTAAATTCTCATACTACATCCGGATATCCTCTACCAAACAGGTCTAGCTCTCCATTCAGAACCCAAGACCACGAGATTGAGGCTTCACGGTCAAGAGAAACTAGGTATCAGGATCTACTAGAACATAGGTCCAATTTCCTTGAACGGAGAAGAAGAATACGATCTCAGGTTCGTGCTCTTCAGCGGTTGGGCAGCCGGTTTGAAAATCTGTCTGGACATGACAGATCATGTATCTTGTCTGGTCAACATAGAAACGGTCGTTGTACATGCAGAATAAGTAGCCGCGAGAACAATTCAAACTCAAACGATGATACAAATGCTAGAGCTAGCATATCAAGAATAGTGATGTTAGCTGAAGCCTTATTCGAGGTTCTGGATGAAATTCACCAGCAATCAGTGGTTTTATCTTCCCGCCCTTCTGTATCCTCTATCGGATCTGTTCCCGCGCCTGCTGAAGTTGTCGAATCCTTACCTGTTAAAATATACACAAAGTCACACAAACATCAAGAAGAACCTGTACAATGCTATATATGTCTTGTGGAGTATGAAGATGGAGACAGCATGCGAGTACTTCCTTGCCATCATGAATTTCATACAACATGTATAGACAAGTGGCTGAAGGAGATTCACAGGGTATGTCCACTATGTCGGGGAGATATTTGTATATCAGATTCACTGCCAACAGAGAACTAA 1659 0.4298 MGSSSSKGASSSCSLRKNRSKRHRGFPSYCLGTTSGSRDSDNDERVCDQNKVNGSDVTYTSSNEIDSDEAKSESFRKVKPDEIPCMPSNIDLDEWSHTESRTSSIPAHASSTQSTNSMSRFLSRFSLIPGNISFRLSRTTSLGSSRPCPDSSQSLSMFNNEDELSLHNRNQTQQYSGGNGSFVNPVPIQYHGDASNSLSSNVPIFGLASNLSSSPTLSPLEDTVRDGYDAREMLGMNMFSPRVNTEAANVMDRRNGAREPVDRNVRFSRTLSVGRLRDRVHRRSGLADFNFCPLQQERDASEDSVRQVGERGTGVSPSDRNTLNSHTTSGYPLPNRSSSPFRTQDHEIEASRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCTCRISSRENNSNSNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPAEVVESLPVKIYTKSHKHQEEPVQCYICLVEYEDGDSMRVLPCHHEFHTTCIDKWLKEIHRVCPLCRGDICISDSLPTEN 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06121 552 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 551 - -
Vifa1g06121 552 MobiDBLite consensus disorder prediction 1 15 - -
Vifa1g06121 552 MobiDBLite consensus disorder prediction 298 353 - -
Vifa1g06121 552 MobiDBLite consensus disorder prediction 1 91 - -
Vifa1g06121 552 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 460 543 IPR013083 -
Vifa1g06121 552 MobiDBLite consensus disorder prediction 66 80 - -
Vifa1g06121 552 ProSiteProfiles Zinc finger RING-type profile. 497 539 IPR001841 -
Vifa1g06121 552 MobiDBLite consensus disorder prediction 314 341 - -
Vifa1g06121 552 SMART ring_2 497 538 IPR001841 -
Vifa1g06121 552 MobiDBLite consensus disorder prediction 51 65 - -
Vifa1g06121 552 SUPERFAMILY RING/U-box 477 545 - -
Vifa1g06121 552 Pfam Ring finger domain 496 539 IPR001841 -
Vifa1g06121 552 FunFam Putative RING zinc finger domain superfamily protein 466 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06121 Vifa-Chr1 956476284 956479889 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06121 214 546 C3H Transcription Factor Family AT5G45290 59.366 2.96e-118 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06121 - - gmx:100786091 784.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06121 1 956476284 956479889 Vifa1g06121 1 956476284 956479889 ECH