Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06117 ATGGAGAGCACAAGATTAGGCCAATGGTTAAAGCTAAATCTTCTGGTGTTTGTACTGGTATTGCTCAAGGCAGAAGCAGGTTATGTACCAATCACTTATGTCAAGAGCGCGGTAACAAAAGGAGCCGTTTGTTTGGATGGTAGTCCACCAGCTTACCATTTAGATAGAGGATTTGGAAAAGGAAATAACAGTTGGTTAGTTCAATTTGAGGGAGGAGGATGGTGCAACAATATCACTACTTGCCTTGGGCGTAAAATGAATCGTTTAGGTTCATCAAAGCGAATGGCTAATCAAATTGCCTTTTCAGGAATTTTGAATAACAGGAGATTGTTCAATCCAGATTTCTACAACTGGAACAGAATCAAGGTTAGATACTGCGATGGTTCATCTTTTACTGGTGATGTGGAAGCTGTAAATCCGGTAACAAAGTTGCACTTTAGAGGAGCAAGAGTTTTTAATGCTGTCATGAAAGATTTGCTAGCAAAAGGAATGAAAAATGCTCAAAATGCTATTATTTCAGGATGTTCAGCTGGTGGTTTAACTTCAATACTTAATTGTGATCGCTTTCGAGCTCTTTTACCGCTAGGAGCTAAAGTGAAATGCCTCTCGGATGCTGGTTATTTTATCAACGCAAGAGATGTATCTGGAACACAGCACATTGAAGAGTTTTTCGGTCAAGTTGTTACAACACATGGATCTGCAAGGAATTTGCCGAGATCATGCACTTCAAGGCTCAGTCCAAGGCTGTGCTTTTTCCCTCAATATGTTGTATCACAAATCGCTACACCAATTTTCTTTATAAATGCGGCGTACGACTCATGGCAGATTAAGAACATTTTGGCCCCGGGTGTTGCTGATCCTCACGGACGCTGGCATAGCTGCAAGATGGATATAAACAACTGCTCTTCCAATCAACTAGATCTAATGCAAGGCTTTAGATCACAATTCCTAAGAGCATTGACTGTTCTAGGAAACTCTCCAACCAAAGGAATGTTCATAGACTCTTGCTATGCTCACTGCCAAACCGAAATGCAAGAAACATGGTTTAGAAGTGATTCTCCCTTATTGGCCAAGACAACCATTGCAAAAGCTGTAGCAGACTGGTTTTATGAAAGAAGGCTTTTCCATCAAATAGACTGTCCTTACCCCTGCAATCCGAGTTGTCACAACCGCGTTTTTCAACAAGACAATCCAGGAAAAAATGTCACCACCATCGAAGGAACTTCATCAGCTGCATCAGCTATAAAGGCCAGTTTTTCAAAACTGTCAAACAAGGCGCAATGGATTGAGCTTTTGTGCGTTAGAATCGGTTGGCTTCTATTGACGATGGTTATTCTGGTCATCCTATAA 1350 0.4111 MESTRLGQWLKLNLLVFVLVLLKAEAGYVPITYVKSAVTKGAVCLDGSPPAYHLDRGFGKGNNSWLVQFEGGGWCNNITTCLGRKMNRLGSSKRMANQIAFSGILNNRRLFNPDFYNWNRIKVRYCDGSSFTGDVEAVNPVTKLHFRGARVFNAVMKDLLAKGMKNAQNAIISGCSAGGLTSILNCDRFRALLPLGAKVKCLSDAGYFINARDVSGTQHIEEFFGQVVTTHGSARNLPRSCTSRLSPRLCFFPQYVVSQIATPIFFINAAYDSWQIKNILAPGVADPHGRWHSCKMDINNCSSNQLDLMQGFRSQFLRALTVLGNSPTKGMFIDSCYAHCQTEMQETWFRSDSPLLAKTTIAKAVADWFYERRLFHQIDCPYPCNPSCHNRVFQQDNPGKNVTTIEGTSSAASAIKASFSKLSNKAQWIELLCVRIGWLLLTMVILVIL 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06117 449 PANTHER NOTUM-RELATED 17 390 IPR004963 GO:0016787
Vifa1g06117 449 Pfam Pectinacetylesterase 23 373 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06117 Vifa-Chr1 955526528 955530351 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06117 5 393 Carbohydrate Esterase AT4G19420 62.264 0.0 569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06117 K19882 - gmx:100776478 740.339