Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06112 ATGAAGAAGAGTGAGAGTGGTGGATATGTGAGAGCAGATCAAATAGATCTCAAGAGTTTAGATGAACAATTGCAAAGGCATCTTAGTAGAGCATGGACTATGGAGAAGAAGAATAAGGAGAAAGAAGATGAAGGTGGTGAAGTTGTTGGAAGGTCTTCTTCTAATAATAGTACTTCAAGAAATAGACAAGAATGGGAGATTGATCCTTCTAAGCTTATCATCAAAACTGTCATTGCTCGTGGCACTTTTGGGACTGTTCATCGTGGTGTTTATGATGGTCTTGATGTTGCTGTTAAGCTTCTTGATTGGGGGGAAGAGGGACATCGGTCAGACGCCGAAATAGCTTCATTGAGAGCGGCTTTTACACAAGAAGTTGCTGTTTGGCACAAGCTTGACCATCCTAATGTAACCAAGTTTCTTGGTGCAACAATGGGAACATCGGACCTACAGATACAAACGGAAAACGGTCATATAGGCATGCCGAGTAATCTTTGTTGTGTTGTCGTTGAGTATTGTCCTGGTGGTGCTTTGAAGTCGTATCTAATTAAAAACCGAAGAAGGAAGCTGGCTTTTAAAGTGGTTGTTCAACTAGCTCTTGATCTTGCAAGAGGGTTGAGTTATCTCCACATAAAGAAGATTGTCCATAGAGATGTTAAAACAGAAAATATGCTTCTAGACAAGTCACGCACGTTGAAAATTGCTGATTTTGGTGTAGCTCGTATTGAAGCTTCGAATCCTCATGACATGACTGGTGAAACTGGAACGCTTGGTTACATGGCTCCTGAGGTTCTAAATGGTAGTGCATACAATAGAAAATGCGACGTGTATAGTTTCGGCATATGCTTATGGGAGATATACTGCTGTGACATGCCATATCCTGATCTGAGTTTCTCAGAAGTAACATCAGCTGTTGTAAGACAGAATCTAAGGCCAGAGATTCCGCGATGTTGTCCAAGCTCACTGGCGAACGTGATGAAAAGATGTTGGGATGCTAATCCTGATAAGAGGCCAGAGATGGATGAAGTTGTCATCATGTTGGAAGCTATCGACACTTCAAAAGGCGGAGGTATGATCCCTCTTGATCAGCCACAAAGTTGTTTATGTTTCCGCAAGTATAGAGGACCTTAA 1128 0.4184 MKKSESGGYVRADQIDLKSLDEQLQRHLSRAWTMEKKNKEKEDEGGEVVGRSSSNNSTSRNRQEWEIDPSKLIIKTVIARGTFGTVHRGVYDGLDVAVKLLDWGEEGHRSDAEIASLRAAFTQEVAVWHKLDHPNVTKFLGATMGTSDLQIQTENGHIGMPSNLCCVVVEYCPGGALKSYLIKNRRRKLAFKVVVQLALDLARGLSYLHIKKIVHRDVKTENMLLDKSRTLKIADFGVARIEASNPHDMTGETGTLGYMAPEVLNGSAYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDANPDKRPEMDEVVIMLEAIDTSKGGGMIPLDQPQSCLCFRKYRGP 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06112 375 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 50 349 - -
Vifa1g06112 375 MobiDBLite consensus disorder prediction 49 63 - -
Vifa1g06112 375 FunFam Serine/threonine-protein kinase HT1 172 357 - -
Vifa1g06112 375 Gene3D Phosphorylase Kinase; domain 1 60 155 - -
Vifa1g06112 375 Gene3D Transferase(Phosphotransferase) domain 1 172 362 - -
Vifa1g06112 375 Pfam Protein tyrosine and serine/threonine kinase 74 344 IPR001245 GO:0004672|GO:0006468
Vifa1g06112 375 ProSiteProfiles Protein kinase domain profile. 72 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06112 375 MobiDBLite consensus disorder prediction 30 48 - -
Vifa1g06112 375 MobiDBLite consensus disorder prediction 30 63 - -
Vifa1g06112 375 FunFam Kinase suppressor of Ras 1 61 156 - -
Vifa1g06112 375 CDD STKc_MAP3K-like 78 346 - -
Vifa1g06112 375 SUPERFAMILY Protein kinase-like (PK-like) 54 346 IPR011009 -
Vifa1g06112 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Vifa1g06112 375 SMART serkin_6 72 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06112 375 PRINTS Tyrosine kinase catalytic domain signature 317 339 IPR001245 GO:0004672|GO:0006468
Vifa1g06112 375 PRINTS Tyrosine kinase catalytic domain signature 207 225 IPR001245 GO:0004672|GO:0006468
Vifa1g06112 375 PRINTS Tyrosine kinase catalytic domain signature 169 182 IPR001245 GO:0004672|GO:0006468
Vifa1g06112 375 PRINTS Tyrosine kinase catalytic domain signature 273 295 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06112 Vifa-Chr1 955051729 955054814 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06112 2 313 MAP Kinase Kinase Kinase AT3G01490 75.504 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vifa1g06112 PK_Tyr_Ser-Thr 7.4e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06112 - - gmx:100806635 692.96