Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06093 ATGGAGTCTGGTCGTCTTTACTTTGATACCTCTACTTGCCGTGGTAACAACAACATGAACATGCTCTTCCTTGGAAATGCTGATCTTGGTTTTCGAGGAAGGTCAATGATGAGCATGGAGGAAGGCTCGAAGAGGAGACCTTTTTTCAGCTCGCCGGATGAACTGTATGATGAGGAGTATTACGAGGAACAGTCGCCGGAGAAGAAGCGCCGCCTCACTTCCGAGCAGGTCCATCTATTGGAAAAGAGCTTTGAAGAAGAGAACAAACTTGAGCCAGAGAGGAAAACTCAATTGGCCAAGAAGCTAGGGTTGCAACCTAGACAGGTGGCTGTATGGTTTCAGAACCGTAGGGCTAGATGGAAGACAAAACAACTTGAAAGAGATTATGATGTTCTTAAGTCTTCCTATGAGTCCCTTCTTTCAACATATGATTCCATTGTTAAGGAGAATGAGAAACTCAAATCTGAGGTGGTTTGCTTAAATGAGAAGTTTCAAGTTCAAGGTAAGGATATGCTTGAAGAGCCTTTGTCGGAGAAGAAAGTCGATCCACTTCCGGTGGATATCACTCAGATTTTCGGCATGAAGTTGGATGAACACGTGAGTTCTGGAAGCGTTGGAAGCGCGGTGGTGGACGAGGGTAGTCCTCGTGTTGTTATTGACAGTGTTGATTCGTACTTTCCAGCTGACGACTATGGTGGATGTGTGGCCCCTATCGAAAGAGTTCAATCAGAGGAAGATGATGGGAGTGATGATGGGAGGTGTTGTTTTGATGTGTTTGTTACATCTGAAACTGAGCAACAAAACCATGAAGGAGAAGGGTTGAATTGGTGGGGTAATATGTATTATGTTGCATGA 855 0.4468 MESGRLYFDTSTCRGNNNMNMLFLGNADLGFRGRSMMSMEEGSKRRPFFSSPDELYDEEYYEEQSPEKKRRLTSEQVHLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYESLLSTYDSIVKENEKLKSEVVCLNEKFQVQGKDMLEEPLSEKKVDPLPVDITQIFGMKLDEHVSSGSVGSAVVDEGSPRVVIDSVDSYFPADDYGGCVAPIERVQSEEDDGSDDGRCCFDVFVTSETEQQNHEGEGLNWWGNMYYVA 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06093 284 SMART HOX_1 66 127 IPR001356 GO:0003677
Vifa1g06093 284 CDD homeodomain 68 124 IPR001356 GO:0003677
Vifa1g06093 284 SUPERFAMILY Homeodomain-like 57 125 IPR009057 -
Vifa1g06093 284 FunFam Homeobox-leucine zipper protein HAT5 61 125 - -
Vifa1g06093 284 Coils Coil 136 163 - -
Vifa1g06093 284 ProSiteProfiles 'Homeobox' domain profile. 63 123 IPR001356 GO:0003677
Vifa1g06093 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 54 212 IPR045224 GO:0003700
Vifa1g06093 284 ProSitePatterns 'Homeobox' domain signature. 98 121 IPR017970 GO:0000981|GO:0006355
Vifa1g06093 284 Gene3D - 61 130 - -
Vifa1g06093 284 PRINTS Lambda-repressor HTH signature 94 103 IPR000047 GO:0003677
Vifa1g06093 284 PRINTS Lambda-repressor HTH signature 103 119 IPR000047 GO:0003677
Vifa1g06093 284 Pfam Homeodomain 68 121 IPR001356 GO:0003677
Vifa1g06093 284 Pfam Homeobox associated leucine zipper 123 164 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06093 Vifa-Chr1 952358366 952360647 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06093 1 278 Homeobox Transcription Factor Family AT3G01470 56.842 1.11e-97 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa1g06093 Homeodomain 4.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06093 K09338 - gmx:100813420 436.417