Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06092 ATGGAGTCTGGTCGTCTTTACTTTGATACCTCTACTTGCCGTGGTAACAACAACATGAACATGCTCTTCCTTGGAAATGCTGATCTTGGTTTTCGAGTAGGAAGGTCAATGATGAGCATGGAGGAAGGCTCGAAGAGGAGACCTTTTTTCAGCTCGCCGGATGAACTGTATGATGAGGAGTATTACGAGGAACAGTCGCCGGAGAAGAAGCGCCGCCTCACTTCCGAGCAGGTCCATCTATTGGAAAAGAGCTTTGAAGAAGAGAACAAACTTGAGCCAGAGAGGAAAACTCAATTGGCCAAGAAGCTAGGGTTGCAACCTAGACAGGTGGCTGTATGGTTTCAGAACCGTAGGGCTAGATGGAAGACAAAACAACTTGAAAGAGATTATGATGTTCTTAAGTCTTCCTATGAGTCCCTTCTTTCAACATATGATTCCATTGTTAAGGAGAATGAGAAACTCAAATCTGAGGTGGTTTGCTTAAATGAGAAGTTTCAAGTTCAAGGTAAGGATATGCTTGAAGAGCCTTTGTCGGAGAAGAAAGTCGATCCACTTCCGGTGGATATCACTCAGATTTTCGGCATGAAGTTGGATGAACACGTGAGTTCTGGAAGCGTTGGAAGCGCGGTGGTGGACGAGGGTAGTCCTCGTGTTGTTATTGACAGTGTTGATTCGTACTTTCCAGCTGACGACTATGGTGGATGTGTGGCCCCTATCGAAAGAGTTCAATCAGAGGAAGATGATGGGAGTGATGATGGGAGGTGTTGTTTTGATGTGTTTGTTACATCTGAAACTGAGCAACAAAACCATGAAGGAGAAGGGTTGAATTGGTGGGGTAATATGTATTATGTTGCATGA 858 0.4464 MESGRLYFDTSTCRGNNNMNMLFLGNADLGFRVGRSMMSMEEGSKRRPFFSSPDELYDEEYYEEQSPEKKRRLTSEQVHLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYESLLSTYDSIVKENEKLKSEVVCLNEKFQVQGKDMLEEPLSEKKVDPLPVDITQIFGMKLDEHVSSGSVGSAVVDEGSPRVVIDSVDSYFPADDYGGCVAPIERVQSEEDDGSDDGRCCFDVFVTSETEQQNHEGEGLNWWGNMYYVA 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06092 285 Gene3D - 62 131 - -
Vifa1g06092 285 Pfam Homeobox associated leucine zipper 124 165 IPR003106 GO:0006355|GO:0043565
Vifa1g06092 285 SUPERFAMILY Homeodomain-like 58 126 IPR009057 -
Vifa1g06092 285 SMART HOX_1 67 128 IPR001356 GO:0003677
Vifa1g06092 285 ProSiteProfiles 'Homeobox' domain profile. 64 124 IPR001356 GO:0003677
Vifa1g06092 285 CDD homeodomain 69 125 IPR001356 GO:0003677
Vifa1g06092 285 PRINTS Lambda-repressor HTH signature 95 104 IPR000047 GO:0003677
Vifa1g06092 285 PRINTS Lambda-repressor HTH signature 104 120 IPR000047 GO:0003677
Vifa1g06092 285 Pfam Homeodomain 69 122 IPR001356 GO:0003677
Vifa1g06092 285 ProSitePatterns 'Homeobox' domain signature. 99 122 IPR017970 GO:0000981|GO:0006355
Vifa1g06092 285 Coils Coil 137 164 - -
Vifa1g06092 285 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 55 213 IPR045224 GO:0003700
Vifa1g06092 285 FunFam Homeobox-leucine zipper protein HAT5 62 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06092 Vifa-Chr1 952358366 952360647 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06092 1 279 Homeobox Transcription Factor Family AT3G01470 56.842 2.45e-97 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa1g06092 Homeodomain 4.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06092 K09338 - gmx:100813420 431.795