Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06091 ATGATCATGGAACTCACCGAATCCTCCGCGGCTAACCTCAACAACCTCCCGCTTCTGCCGCCGCAGCAACCGCCGCACAACAACCTCCAAGATACTCGTTCAATCTTATGCATCGACCTAAACGAGATCCCTTCTCCTTCCTCCTCATTCCTTGAAACCCTACCTGACCTCACCATCGACATCGTTCGTACCTACCACGAAAATCCACCGCCACCTCCTGGTGGTCCCGCAGCTCTCCCCGGTGGTAGTACTTCATGCGCCGTCTGTGCTAAGCCCGGCGGAGGCGGAGATGGTAATTGCTTAGTCTGTGACGGCTGTGAGCGGAGTTTTCACTTGGCTTGCGCCGGGATTCGAGGTGGCGGTGGTCGGCAGGTTGCTGCGAGTCTAGGAGAGTGGGTTTGTGGTGAGTGTTCGGCTGGTGGTGTGAAGAGTAAACGGTGGCCGTTGGGTGTGAAGTCGAAGCAGCTTCTTGATATCAATGCTTCTCCGCCTAGTGATGTTGACGGAGAAGAGTTGCATGATGCGAGAAAGCACACGATGGGTGATAAATCTTTTGGTACCAATCAATTTGGTGATCCAGTGACATATTCAACCTTCTACAACGGGAGTGTGTTTGGCTTGCAAAGGGCATCTGGAGTTATGACACACGCTGTTAGAGTGGGTTTTGAGGATATATTGAATCACACCCAAGCAATGGCTAGAAGGTTTGAGGAAGTACCATCTCAAAGTCCAAATGAGTCAATTTTGCTGGCTCTTAGAGATTTTATATCTGAAAGGCATGGTGTACTGGAGGAAGGTTGGCGAGTGGAACTTAGACAATCAATGATCAGCCCTGACCTCTATGCAGTTTATTGTGCCCCCGATGGAAAGATATTTGATTCTGTGTATGAAGTAGCTAATTATCTGGGGCTACCGTCTGGCTACAATTCCATGGAATCTGAAATAAAAAACGAAATGTCTCTTTCTTTAGGTGGGCCTCACATATCCAGAAAACGGAAGTCTTCTAGAACTCTGACAGCCAATGGTTATGCAGAAAAGCAGGGAACCATGATCAATAGTAATTATAAGGATTGTTCTTCTGATGGTTTAATTATGGAATGTGCTAATGCTCAGGGGTCTATCCCAAAAGCCACTGAGATTGGAAGAAAAGAGAACAGTCACACTGACCCTGATCAATTCGCTGATGGACTTCCTCTGCAGTTTAAGGACTTCTATGTTCTTTCTTTGGGAAAAGTTGATGGGAGACCTTCATATTATGATGTTAACCTTACCTTTCCTGTGGGTTATGAGTCTTCCTGGCATGACAAGATTACTGGCTCTCTTTTTATGTGCCAAGTTTTGGATGGTGGTGATTCTGGACCTATATTTAGGATTAAAAGGTGTTCATGTTCAAAATTTCCTATTCCAGATGGGTCAACCATCCTTTCAATGCAAAGTCATTGTCAATTTGTAAGCGAAATCAATGAATTTCAGAGAGAGACTAATGCTAGTATGGATTTCGATGGTGACGAAAGTATCCAAATGATCCTTTTAGAACCTTGTGCCCCAACAGAAAATGACATCGTAAGTTGTGTTACCAGTTGCTCAAATGAAGCATATGCATCAGAAGGATTAAGGCCAGTTGCTGGTTCAGTTCAAGATAATATTGGAAATTCATTTGCTGATGATATGGATTTTGGTGATGAAATTGGTGAAGTTTTGGTTGAAGAGCGGTCCCCAATCTTTGCATGGAAACTTATTTCTCAAAAGTTAGTCAGTGCTTGCAAGGATATCTGCAAGAAGAAAGGAACTCTTAAATTATATTGTAAACATGTTGTAAGTGAAATGGGCTTACATAAATGGGATTTAAGGAATGGAAAAAGTGATACCCACTTCCCTTCGATGGATAAATTTTGTGGTTATCCTGGGTTTGTCAGTATTCCAAATACACTTTATGCAGACAGTGATCCGACAGGTCTCTATGAGCTGTTAGGAAAATGGTTGGAGCAGGATAGATTTGGATTGGATGTTGAATTTGTGCAAGAAGTATTGGAACAGCTTCCCGGTGTGCAGGATTCTTTGCAATATGAACTTTTGAGTAGTAGAACTAATAGCTCTTCATTACCAACAGTGGAAAATGGTTTCCTAGTGGTCGAATGTAAAGGTCAATCAAAATATCAAGATGAAGCAGCAGCTGTTCAAGGTTTATATAGAAGGCATAAGAAGGCAAGATTGACTGAAAGTTTTGTTAAGGAAGACCGATGTCCACCTCCTGGGAAACCACTGTGCTCTAGGGCTCCTACTGAACTCATTGGTGACATTTTTGAGGTTTGGGAGCATTTAGATCGATTTCATGAAATTCTAGACCTGAAAGAACCTTTGTTATTGGAGGAGCTTGAGAAGGAACTTATCAACCCATGGTTTGATGAATTAGAGTTCCCTGAGAAACTGGAGAGGGGAATGGGTAGAAATCAAGTTTCATATTCACAAGGGGGTAATGATGATTGCCGACTAATAAGTGAAGCTGGTCCATCAGGTTCCACAGAATGTTCTTTTATTCAAGTGGAAACAGAAGCTATGAAAGAGGAAGCCCAAGTGGCTGCTCTGGTGGATCCAAATTCTGAACCTGGAGAGACTCGGGGTAGACGAGGAAGAAGGAAAGATATAGATAGTGCAGTTCCTGCCAAACGAACTAAAGTCAATATGCTTCCTATTAATGAATTGACATGGCCAGAACTAGCTCGTAGATATATCTTGGCTTTCTTATCTATGGATGGTAACCTCGAGTCTGCAGAAATTACTGCCCGTGAAAGTGGTAAAGTATTTCGTTGCTTACGAGGTGATGGTGGTTTGCTGTGTGGGTCCCTTACTGGTGTGGCTGGAATGGAAATTGACGCACTGTTGCTTGCGGAGGCAACAGCAAAGATTTTTGGTTCCTTGAGCAGAGAAAATGATGTACTCATCATGGAAGAAAACGAGTCTGATGCGAAGGATGCTTCTGAGATGAAATTGGCGAATGATGGGAAAATTCCTGAATGGGCACAGGTGCTGGAACCTGTCAGAAAGCTACCAACAAATGTGGGAACCCGAATCAGAAAGTGTGTTAATGATGCTTTAGATAAGAATCCGCCAGATTGGGCGAAGAAAATACTGGAACACTCAATTAGTAAGGCCGTGTACAAGGGCAATGCATCTGGACCAACAAAGAAAGCAGTTCTTTCAGTGTTGAATGAGGTAACTAATGGAGTGCAGCTGAATACCAACAAGGAAAGGAAAAAGAAGATTGTTTTATCTATTTCTGACATTATTATGAAGCAATGCCGCATTGTATTACGCCGTGCAGCTGCGGCAGATGATTCAAAAGTTTTTTGCAATTTGTTGGGAAGAAAATTAGTAAATTCTTCTGATAACGACGACGAAGGGCTTCTTGGATCTCCAGCTATGGTGGCCCGGCCTCTTGATTTCCGAACTATTGATCTAAGATTGGCTTCTGGAGCTTATGATGGATCTCATGAAGCTTTTCTTGAGGATGTTCGTGAGTTGTGGAGCAATGTTCGTGTTGCTTTTGGGGATCAACCGGATTTAGTTGAACTTGCGGACAAATTATCCCAGAATTTTGAACTTTTATACGATGAGGAGGTTGTCACCTATGTCCAAAAGTTTGCAGAGTATGCTAAAGTGGGATGCTTAAGTGCAGAAATGAAAAAAGAAGTTGATGTTTTCATTGCATCAACAAATGATATTCCGAAGGCCCCTTGGGATGAGGGAGTTTGTAAAGTATGTGGCGTTGATAGGGACGATGACAGTGTTCTACTATGTGATACTTGTGATGCTGAGTATCATAAATATTGCTTGAATCCTCCACTTGTAAGGATCCCTGAAGGAAATTGGTACTGTCCATCTTGCATTGGTGGTAAACATTCAACACAAGATGTCACGGAACCTGCAAAGATTACTAGAAAACGTGGTAGTAAAAAATTCCAGGGAGAAGTTATCTGTCTTTATTTGGAAGCACTAACTCATTTATCGGCTGTAATGGAAGAAAAAGAATATTGGGAGTACAGTGTGGGAGAGAGAATGCTCCTTCTCAAGTTTTTATGTGGTGAGTTGCTCAGCTCTTCCCTGATACGACAGCATCTTGAGCAGTGTGCAGAGTCATCTGTTGAGTTACATCAGAAATTGCGTGCACTCTCTGTGGAGTGGAAAAACCTGAAAATTAAGGAAGATGTTTTATCCACAAAAGCTGCAAAATTTGAGTTACTGTCACAAAGTACCAATGGGGAAGTTGTTCTTAAGGACGGGTTCACATCCGTGTTCTCAAATACAAGTAAATGTCTTTTTAAGCCACATACTGCAACCTCCAATCCTAATGGTCTTGGGGTATTTGTTGACAGTCTACCTTCAGAAGAGATTCCTAAAGAGAAGTCTAGGTTCAATAGTGTTGATAAAAGCATATCCGTGACACATTCAGATTCTGATAGCCAAAATATGAATTCCATAGAAGGACAACTTAGGACTGTTCCTGTGGTTGTGGAGTCTCCTTGTACAGATAAATCCCCCAAGTATTTTCCATCCCCAAATCACATGCCCCAAGGAATAAATGGTTACAGTGGAGCAACTCATATTCAGGGTATACACCAGAAATGTGAGGTAAGGGATGTATCTACTTCTGCGTCATACCAGCAGCAGGGACAATGCGTGCCTGTTGAAATTTCCCAAAATGCCGTGAATGAGTTGGAACCATACCACCTCGAGCTCAATGCCATCAAGCATAATATTTCGCTATTGCAGGACTCTATAACTAGCATAGGATCACAGCTGTCAAAGGTCCCTGTTCGCCGGGAATTTTTAGGTATTGATTCCATTGGTCGACTATACTGGGCTTTGGGTACACCCAGTAAACGTTCACGTATAGTTGTTGATGCAAGTGCTGTTCTTCAGCATAGAAAAGGACTGTCAGCTAGCAAAGATTTTGTCGATAAATTTTCTGCTCGGCAGCATTGGGCATTATGTGAGAAGGATAACTATAAGATGTTAGGGCTGATGAAGGACTGCTCTTCTTTGAGTTCTTTACCACTTAATGCTTCAGGCAATAGTTCACCGTGGATTGCTTATGAAACAGATTCAGAAATCGAAGAGCTATTGGGTTGGTTAACAGATAATGATCCTAAAGAAAAAGAGCTGAGAGATTCGATTATGCTGGCGCCAAAACATAAACTTCAAGAGTTCGTTAATGCACACACTGAATGTCAGGTTGATGATCAAGTGCCAAGAAGTTCACCATCTAATTCTCTTGTTACAAAGGCCACTTCCTTGCTGGAAAAGAATTACAGTCCCTACTTTGAGTTGGATAATGCAGAGGTAGTGAAGGAGCAAAGTAAAAAGAACAGAACAACTACTGATGAAAAGTTGTGTAGGTGTGAATGCCTAGAACCCATATGGCCTTCTAGGAAACATTGTTTGTATTGCCACAAAACCTTTTTGACTGATGTTGAATTTGAGGTACACAATGATGGCAAATGTAGTGCAGAACTTCTGGCCTTGGAGAAGAATAAAGATAAAAATGGATCTTCTAAAGGAAGAGGGAACTTGAAATGTGATACCTCACATGAAAAATCCAGAGCTTATGCAGAAACAGCTGGAAACTCAATCAATAAATGTTCCAAGCTAAGTTTGAATTTGATTAAGTTTTCAAATGAAGGTTCCTCTTGCCCTTTTAATTTTGAAGCTGTATGCTCAAAGTTTGAGACAGATGATTCCAACAAGAAACTTGTCAGAGAAATTGGTCTGATTGGTTCAGATGGTGTGCCATCATTTATTCCTTCTGTATCTCCTTTTGTTAGTGATTTTACGCTATTCTTATCCCTAAAGGGCGACGGCATTGTTGGTGGTGCCTCTAATGTTTCAGAAAGCCGGGTTTCTCAGGAAAACACTGATGGTGCTGGCATATGCCACGAATCAGGAAAACCCACTCAGAGTTTAGCTGCAAATGAAAGCAATGAAACAGGAAAATCCAGTAAATTAGGAGAGCAAAGAGATGGAAAGTTATCTTTTTCTAATTCAGTTTCAGATATGGGAGTCTATGGCTGCTGCGTGGTTCCTTCGTCGTCTTTGAGACCACTAGTTGGTAAAGTTTCTCATATCTTGAGGCAACTAAAAATTAATCTACTTGATATGGATGCTGCACTTCCAGAAGTTGCTATAAGACCATCGAGGGCACAGTTGGACAGAAGACAGGCTTGGCGTGCATTTGTAAAATCTGCTCAGACTATATATGAGATGATTCAGGCAACAATTGCGCTGGAGGATATGATTAAGACGGAATTCTTAAGGAATGACTGGTGGTACTGGTCATCATTCTCAGCTGCTGCCAAATCTTCTACTTTGCCTTCCCTTGCTCTTCGAATATACTCTCTTGATTCTGCCATTATGTATGAGAAAATGCCCAATTCAAGTTTAACTGACAGCTCCGATCCTCCTGCCGTAGCAGAACAGAAACTGGTGATCACCGTGGATTCAGATAAAACCAAAGCAAGCCGGAAGTCAAACAGGAAAAGAAAGGAATCAGATAGTTAA 6555 0.42 MIMELTESSAANLNNLPLLPPQQPPHNNLQDTRSILCIDLNEIPSPSSSFLETLPDLTIDIVRTYHENPPPPPGGPAALPGGSTSCAVCAKPGGGGDGNCLVCDGCERSFHLACAGIRGGGGRQVAASLGEWVCGECSAGGVKSKRWPLGVKSKQLLDINASPPSDVDGEELHDARKHTMGDKSFGTNQFGDPVTYSTFYNGSVFGLQRASGVMTHAVRVGFEDILNHTQAMARRFEEVPSQSPNESILLALRDFISERHGVLEEGWRVELRQSMISPDLYAVYCAPDGKIFDSVYEVANYLGLPSGYNSMESEIKNEMSLSLGGPHISRKRKSSRTLTANGYAEKQGTMINSNYKDCSSDGLIMECANAQGSIPKATEIGRKENSHTDPDQFADGLPLQFKDFYVLSLGKVDGRPSYYDVNLTFPVGYESSWHDKITGSLFMCQVLDGGDSGPIFRIKRCSCSKFPIPDGSTILSMQSHCQFVSEINEFQRETNASMDFDGDESIQMILLEPCAPTENDIVSCVTSCSNEAYASEGLRPVAGSVQDNIGNSFADDMDFGDEIGEVLVEERSPIFAWKLISQKLVSACKDICKKKGTLKLYCKHVVSEMGLHKWDLRNGKSDTHFPSMDKFCGYPGFVSIPNTLYADSDPTGLYELLGKWLEQDRFGLDVEFVQEVLEQLPGVQDSLQYELLSSRTNSSSLPTVENGFLVVECKGQSKYQDEAAAVQGLYRRHKKARLTESFVKEDRCPPPGKPLCSRAPTELIGDIFEVWEHLDRFHEILDLKEPLLLEELEKELINPWFDELEFPEKLERGMGRNQVSYSQGGNDDCRLISEAGPSGSTECSFIQVETEAMKEEAQVAALVDPNSEPGETRGRRGRRKDIDSAVPAKRTKVNMLPINELTWPELARRYILAFLSMDGNLESAEITARESGKVFRCLRGDGGLLCGSLTGVAGMEIDALLLAEATAKIFGSLSRENDVLIMEENESDAKDASEMKLANDGKIPEWAQVLEPVRKLPTNVGTRIRKCVNDALDKNPPDWAKKILEHSISKAVYKGNASGPTKKAVLSVLNEVTNGVQLNTNKERKKKIVLSISDIIMKQCRIVLRRAAAADDSKVFCNLLGRKLVNSSDNDDEGLLGSPAMVARPLDFRTIDLRLASGAYDGSHEAFLEDVRELWSNVRVAFGDQPDLVELADKLSQNFELLYDEEVVTYVQKFAEYAKVGCLSAEMKKEVDVFIASTNDIPKAPWDEGVCKVCGVDRDDDSVLLCDTCDAEYHKYCLNPPLVRIPEGNWYCPSCIGGKHSTQDVTEPAKITRKRGSKKFQGEVICLYLEALTHLSAVMEEKEYWEYSVGERMLLLKFLCGELLSSSLIRQHLEQCAESSVELHQKLRALSVEWKNLKIKEDVLSTKAAKFELLSQSTNGEVVLKDGFTSVFSNTSKCLFKPHTATSNPNGLGVFVDSLPSEEIPKEKSRFNSVDKSISVTHSDSDSQNMNSIEGQLRTVPVVVESPCTDKSPKYFPSPNHMPQGINGYSGATHIQGIHQKCEVRDVSTSASYQQQGQCVPVEISQNAVNELEPYHLELNAIKHNISLLQDSITSIGSQLSKVPVRREFLGIDSIGRLYWALGTPSKRSRIVVDASAVLQHRKGLSASKDFVDKFSARQHWALCEKDNYKMLGLMKDCSSLSSLPLNASGNSSPWIAYETDSEIEELLGWLTDNDPKEKELRDSIMLAPKHKLQEFVNAHTECQVDDQVPRSSPSNSLVTKATSLLEKNYSPYFELDNAEVVKEQSKKNRTTTDEKLCRCECLEPIWPSRKHCLYCHKTFLTDVEFEVHNDGKCSAELLALEKNKDKNGSSKGRGNLKCDTSHEKSRAYAETAGNSINKCSKLSLNLIKFSNEGSSCPFNFEAVCSKFETDDSNKKLVREIGLIGSDGVPSFIPSVSPFVSDFTLFLSLKGDGIVGGASNVSESRVSQENTDGAGICHESGKPTQSLAANESNETGKSSKLGEQRDGKLSFSNSVSDMGVYGCCVVPSSSLRPLVGKVSHILRQLKINLLDMDAALPEVAIRPSRAQLDRRQAWRAFVKSAQTIYEMIQATIALEDMIKTEFLRNDWWYWSSFSAAAKSSTLPSLALRIYSLDSAIMYEKMPNSSLTDSSDPPAVAEQKLVITVDSDKTKASRKSNRKRKESDS 2184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06091 2184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 146 IPR013083 -
Vifa1g06091 2184 CDD PHD_SF 85 137 - -
Vifa1g06091 2184 Pfam PHD-finger 1250 1296 IPR019787 -
Vifa1g06091 2184 Pfam PHD-finger 86 138 IPR019787 -
Vifa1g06091 2184 ProSiteProfiles FYR domain FYRN motif profile. 396 449 IPR003888 GO:0005634
Vifa1g06091 2184 CDD Bromodomain 1086 1200 - -
Vifa1g06091 2184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1236 1319 IPR013083 -
Vifa1g06091 2184 SMART PHD_3 1250 1296 IPR001965 -
Vifa1g06091 2184 SMART PHD_3 85 138 IPR001965 -
Vifa1g06091 2184 ProSitePatterns Zinc finger PHD-type signature. 1251 1295 IPR019786 -
Vifa1g06091 2184 PANTHER OS02G0192300 PROTEIN 22 2180 - -
Vifa1g06091 2184 MobiDBLite consensus disorder prediction 2163 2184 - -
Vifa1g06091 2184 ProSitePatterns Zinc finger PHD-type signature. 86 137 IPR019786 -
Vifa1g06091 2184 Gene3D - 1092 1214 IPR036427 GO:0005515
Vifa1g06091 2184 SUPERFAMILY FYVE/PHD zinc finger 1235 1300 IPR011011 -
Vifa1g06091 2184 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1330 1374 IPR028942 -
Vifa1g06091 2184 ProSiteProfiles Zinc finger PHD-type profile. 83 140 IPR019787 -
Vifa1g06091 2184 MobiDBLite consensus disorder prediction 865 884 - -
Vifa1g06091 2184 MobiDBLite consensus disorder prediction 1983 1997 - -
Vifa1g06091 2184 CDD PHD1_Lid2p_like 1250 1295 - -
Vifa1g06091 2184 SUPERFAMILY FYVE/PHD zinc finger 84 148 IPR011011 -
Vifa1g06091 2184 Gene3D - 397 506 - -
Vifa1g06091 2184 Pfam Methyl-CpG binding domain 254 305 IPR001739 GO:0003677
Vifa1g06091 2184 SUPERFAMILY Bromodomain 1086 1205 IPR036427 GO:0005515
Vifa1g06091 2184 ProSiteProfiles Zinc finger PHD-type profile. 1248 1298 IPR019787 -
Vifa1g06091 2184 MobiDBLite consensus disorder prediction 2143 2184 - -
Vifa1g06091 2184 MobiDBLite consensus disorder prediction 1968 2006 - -
Vifa1g06091 2184 MobiDBLite consensus disorder prediction 869 884 - -
Vifa1g06091 2184 Pfam Bromodomain 1139 1193 IPR001487 GO:0005515
Vifa1g06091 2184 ProSiteProfiles Bromodomain profile. 1141 1189 IPR001487 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06091 30 2181 C2H2 Transcription Factor Family AT3G01460 44.464 0.0 1672
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa1g06091 Bromodomain 2.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06091 K22768 - gmx:100820223 2945.99