Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06090 ATGGGCATTTGTCTGAAAAAAGGCCAATGGCTGTGGCTTCTGTATGTTTTGCTGATACATATTGTAATTGTAATTAATAACATTGAAGCGATCAGTCCTGATGGCGAGGCACTTGTCAGCTTCAGGACAACAATTATTAACTCTGATGGTATCCTGGTACAGTGGAGGCCTGAGGATCCTGACCCATGTAAATGGAAAGGAGTGAAATGTGATCCAAAAACAAAGAGAGTGACACATCTGATTCTATCACACCATAAGTTAAGTGGGTCTTTATCACCTGACCTTGGGAAGTTAGATCATCTGAAAGTTCTTGCTCTTCATAACAACAACCTTTATGGGATAATTCCACCAGAATTGGGAAATTGCACGGAATTGCAGGGAATGTTTTTACAGGGTAATTACCTTAGTGGAATAATTCCAAGTGAAATAGGAAATCTCTCGCAGCTTCAAAATTTGGATATATCAAGCAATTCCCTTGGAGGGAATATTCCAGTTTCAATTGGAAAGTTGTATAATCTAAAAAAGTTCAATGTATCGACCAATTTTCTGGTCGGACCAATACCTTCTGATGGTGTCCTTGCCCACTTTACAGAAAGCTCGTTTGTTGGAAACCGAGGTTTGTGTGGAGTACAAATTGATTCAACATGTAAAGATGATGGTTCGCCTGGGGAAAAACCTTCAGACCAAAATCCAAATGCAAAGAAGAAATATTCTGGCCGACTTCTCATCAGTGCATCAGCAACTGTGGGCGCACTACTTTTGGTGGCACTTATGTGCTTCTGGGGTTGTTTTCTATATAAAAAGTTTGGTAAAAACGATAGAGTTAGTCTTGCAGTGGATGTTGGTCCAGGTGCATCGATAGTGATGTTTCATGGAGACCTACCATATTCTTCCAAAGACGTTATTAAGAAACTAGAGACATTGAATGAGGAACATATAATAGGAGTAGGGGGATTTGGAACTGTTTATAAGCTTGCAATGGATGATGGGAATGTATTTGCATTGAAAAGGATTGTAAAGATGAACGAGGGCTTTGATAGATTTTTTGAGAGGGAGCTTGCAATTCTTGGTAGCATCAAACACCGTTATTTAGTGAACTTACGTGGATATTGCAACTCACCTACCTCAAAGTTGTTAATATATGACTACCTACCTGGTGGTAGTCTTGATGAAGTTCTTCATGAAAGATCTGAGCAACTAGACTGGGATTCACGGTTGAATATAATCATGGGAGCTGCAAAAGGGCTCGCGTACTTGCACCATGATTGTTCACCTAGGATCATACACCGAGACATAAAATCAAGCAACATTTTACTCGATGGAAAATTGGATGCTCGGGTTTCTGATTTTGGACTTGCCAAACTTCTAGAAGATGAAGAATCTCACATCACTACTATTGTTGCTGGAACATTCGGTTATCTAGCTCCAGAGTATATGCAAAGTGGCAGAGCAACCGAGAAGACAGATGTTTATAGTTTTGGGGTGTTGACACTTGAAGTGCTTAGTGGGAAACGGCCAACAGATGCATCATTCATTGAAAAGGGTCTCAATATTGTTGGTTGGTTGAATTTCCTTATTACCGAAAATAGGCCGAGGGAAATTGTGGATCTACTATGCGACGGGGTGCAGGTGGAAAGCCTTGATGCTTTGCTCTCTGTGGCTATTCAGTGTGTTTCCTCAAGTCCAGAGGATCGACCCACTATGCACCGAGTGGTCCAGTTGCTCGAATCGGAGGTCGTAACTCCATGCCCAAGTGACTTCTATGACTCGGACTAG 1776 0.4127 MGICLKKGQWLWLLYVLLIHIVIVINNIEAISPDGEALVSFRTTIINSDGILVQWRPEDPDPCKWKGVKCDPKTKRVTHLILSHHKLSGSLSPDLGKLDHLKVLALHNNNLYGIIPPELGNCTELQGMFLQGNYLSGIIPSEIGNLSQLQNLDISSNSLGGNIPVSIGKLYNLKKFNVSTNFLVGPIPSDGVLAHFTESSFVGNRGLCGVQIDSTCKDDGSPGEKPSDQNPNAKKKYSGRLLISASATVGALLLVALMCFWGCFLYKKFGKNDRVSLAVDVGPGASIVMFHGDLPYSSKDVIKKLETLNEEHIIGVGGFGTVYKLAMDDGNVFALKRIVKMNEGFDRFFERELAILGSIKHRYLVNLRGYCNSPTSKLLIYDYLPGGSLDEVLHERSEQLDWDSRLNIIMGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGKLDARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLTLEVLSGKRPTDASFIEKGLNIVGWLNFLITENRPREIVDLLCDGVQVESLDALLSVAIQCVSSSPEDRPTMHRVVQLLESEVVTPCPSDFYDSD 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06090 591 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 75 576 - -
Vifa1g06090 591 SMART serkin_6 308 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06090 591 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Vifa1g06090 591 SUPERFAMILY L domain-like 33 197 - -
Vifa1g06090 591 Gene3D Ribonuclease Inhibitor 32 218 IPR032675 -
Vifa1g06090 591 SUPERFAMILY Protein kinase-like (PK-like) 292 575 IPR011009 -
Vifa1g06090 591 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 384 586 - -
Vifa1g06090 591 FunFam LRR receptor-like serine/threonine-protein kinase FEI 1 282 383 - -
Vifa1g06090 591 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672|GO:0006468
Vifa1g06090 591 Gene3D Phosphorylase Kinase; domain 1 283 383 - -
Vifa1g06090 591 ProSitePatterns Protein kinases ATP-binding region signature. 314 340 IPR017441 GO:0005524
Vifa1g06090 591 ProSiteProfiles Protein kinase domain profile. 308 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06090 591 Pfam Protein kinase domain 310 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06090 591 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 31 193 - -
Vifa1g06090 591 Gene3D Transferase(Phosphotransferase) domain 1 384 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06090 Vifa-Chr1 952328915 952337556 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06090 1 584 Receptor kinase-like Gene Family AT2G35620 75.427 0.0 879
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Vifa1g06090 Pkinase 9.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06090 - - gmx:100819230 1043.49