Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06089 ATGCTAACTGGATTAATGGACAATCATTGGAAGGCTTGCACTGATTGGGTTAACCCTAATGGAAAACCTAATCTCCAATTTTTCTCCACTCATTTTGGTTCCTCCAAAGTTCAGGTTGATAAATTGTTACTTCTAATTACACTCAAACTTTGTAAGATTGAGATTCCTTTAACTCGTTTGCACCATAATTGTGAAATGGTTCTTTGCGAAGATGGGACTGAAGCATTAGTCGAAGTTTGTATTGTAGATCACAATTTAGAGGTCAAATTACACGAACTTGTTAAACCGGAGAAAGCAATCAAAGATTACAGAACAGAGATTACTGGTGTCTCTTCTAAAGATCTAGAGACCGTGACTCGCTCCTTAGCTGATATACAAAAATTGATGAAGAAGTGGTTATCCAGTGGAGCCATATTAGTGGGACACAGTTTGTATAATGATCTACGCGTGCTGAAGCTATATTATGATAGAGTGGTCGACACTGCATACATCTTCCAACCCATGGATGGAGCTACTCACAGGAGACCTTCTTTAAATAGTTTGTGTCAGGCAAGTAACAACTTATTTAAATGCAATGCAAGGACTATGATTTTGTATTAA 600 0.375 MLTGLMDNHWKACTDWVNPNGKPNLQFFSTHFGSSKVQVDKLLLLITLKLCKIEIPLTRLHHNCEMVLCEDGTEALVEVCIVDHNLEVKLHELVKPEKAIKDYRTEITGVSSKDLETVTRSLADIQKLMKKWLSSGAILVGHSLYNDLRVLKLYYDRVVDTAYIFQPMDGATHRRPSLNSLCQASNNLFKCNARTMILY 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06089 199 SUPERFAMILY Ribonuclease H-like 62 185 IPR012337 -
Vifa1g06089 199 SMART exoiiiendus 58 198 IPR013520 -
Vifa1g06089 199 Gene3D - 62 192 IPR036397 GO:0003676
Vifa1g06089 199 Pfam Exonuclease 64 163 IPR013520 -
Vifa1g06089 199 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 64 183 IPR047021 GO:0004527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06089 Vifa-Chr1 951701702 951702691 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06089 63 184 C2H2 Transcription Factor Family AT5G40310 33.094 8.75e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06089 K14570 - gmx:100785565 194.897