Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06087 ATGGAGTTATGGTTCTATATGGTAGCATCTATTTGTGTATTAATATTCTTTCAAGCCCTTGTTAATGCCATACGCAATAAGAAGTTACCACCAAGCCCTCCAACTATACCTTTCATAGGTAACATATTATGGCTCTTAAAGTCATCAAAAAACTTTGCTGAACTTGAACCTGTCCTTCGTTCATTAGGATCTAAATATGGTGACATTGTTACTATTTACATAGGTTCAAGACCTTCAATTTTTATAACATCCCATGAAGCTGCTCATAAAGCCCTTGTTAAAAATGGTACAATTTTTGCTAATCGTCCATTGGCTCTTGAAACAACCAAACTCTTCTTCCCTAACCAACGCTCCATTAGTATGGCCTCTTATGGTCCAATTTGGAAACTATTGCGTCAAAATTTTATGCAAGCGACTCAACCTTCTAAATTAAGTTTATATTCTTGTTGTCGTAAATATGCATGGAGTGTTCTCAACCAAAATATTTTAGCTGATATTAAACTAGGGAACAAGAAAATACCTATTGATGAGTATTTCAATTTTGCATTGTACACTTTATTCACGTACATGTGTTTGGGGGAGAAACTTGATAAAGAAAGTGTTGAGAATATTCAAAAGGCACAACATTGTTTGATTCACAATTTTATTAGGTTCAATGTGTTGAATTTTGTACCCATGTTGAGTAGGATTGTGTTTAGAGGATTATGGAAAGAGATCTTGGAAATTCGTGAAAATCAAATAAATGTGTTTCTTCCATTTATAAAAGCACGTCAAGAGAAAATTAAAAACAAGATTAATTGTGGTGATGAAAATGAGGAAGGTTTTGATGCTTATGTTGATAGCCTTTTTGATTTGAAACTACCAGATAATGAGAAAAATATAAATGATGAAGAGTTGGTGAGTTTGTGTTCTGAATTTTTGTTAGGTGGAACAGACACAACAGCTACAACATTGTTATGGAGCATGGCTAATTTAGTAAAAAATCAAAATATTCAAGAGAAAATTTACGATGAAATTAAAAAAGTTGTGAAACATGGTGAAGAAATTGAAGAGAAACATTTGAAAAGGATGCCTTATTTGAAGGCCGTTGTGTTAGAAACATTTAGGAGACATCCACCAGGTCATTTTATTTTGCCTAGGGCTGTTATACAAGAAACTAATATGAATGGTCATAAGATACCAAAAAATGCAATGATTAATTTTCCCGTGGCTGAATTAGGGTGGAATCCAAATGTGTGGGAAAATCCAATGGAGTTTAAGCCTGAAAGATTTTTAAATGAAGGTCATGTTGATTTTGACTTAAAAGGGCTTAAAGAGATTAAAATGATGCCTTTTGGTGCTGGGAGGAGAGTTTGTCCAGCAATTAATATTGCAACACTTCATCTTGAATATTTTCTGGCTAATTTGGTGAGAGATTTTAAATGGACACTTGAAGAGGGGTCTGAGGTTGACTTGAGTGAGAAGCAAGCCTTTACTATTGTGATGAAAAATCCATTGAATCCATGTTTGTCTCCTAGAATTACTTGA 1527 0.3373 MELWFYMVASICVLIFFQALVNAIRNKKLPPSPPTIPFIGNILWLLKSSKNFAELEPVLRSLGSKYGDIVTIYIGSRPSIFITSHEAAHKALVKNGTIFANRPLALETTKLFFPNQRSISMASYGPIWKLLRQNFMQATQPSKLSLYSCCRKYAWSVLNQNILADIKLGNKKIPIDEYFNFALYTLFTYMCLGEKLDKESVENIQKAQHCLIHNFIRFNVLNFVPMLSRIVFRGLWKEILEIRENQINVFLPFIKARQEKIKNKINCGDENEEGFDAYVDSLFDLKLPDNEKNINDEELVSLCSEFLLGGTDTTATTLLWSMANLVKNQNIQEKIYDEIKKVVKHGEEIEEKHLKRMPYLKAVVLETFRRHPPGHFILPRAVIQETNMNGHKIPKNAMINFPVAELGWNPNVWENPMEFKPERFLNEGHVDFDLKGLKEIKMMPFGAGRRVCPAINIATLHLEYFLANLVRDFKWTLEEGSEVDLSEKQAFTIVMKNPLNPCLSPRIT 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06087 508 Pfam Cytochrome P450 30 498 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06087 508 FunFam Cytochrome P450 family protein 23 508 - -
Vifa1g06087 508 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 445 454 IPR017972 GO:0005506|GO:0016705
Vifa1g06087 508 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 8 499 - -
Vifa1g06087 508 Gene3D Cytochrome P450 23 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06087 508 PRINTS P450 superfamily signature 309 326 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06087 508 PRINTS P450 superfamily signature 443 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06087 508 PRINTS P450 superfamily signature 362 373 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06087 508 SUPERFAMILY Cytochrome P450 30 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06087 508 CDD CYP77_89 65 499 - -
Vifa1g06087 508 PRINTS E-class P450 group I signature 298 315 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06087 508 PRINTS E-class P450 group I signature 402 426 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06087 508 PRINTS E-class P450 group I signature 452 475 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06087 508 PRINTS E-class P450 group I signature 361 379 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06087 508 PRINTS E-class P450 group I signature 87 108 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06087 508 PRINTS E-class P450 group I signature 318 344 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06087 508 PRINTS E-class P450 group I signature 442 452 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06087 508 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06087 Vifa-Chr1 951484595 951486121 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06087 1 506 Cytochrome P450 AT1G64940 43.798 1.48e-158 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06087 K24184 - gmx:102660230 739.954