Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06086 ATGTACGGTGGTGGAGGAGGAGACGACGCCCTGGCTGCTCGCCTCGGGTTAATCTCCCCGTCGCTGCTTATTCCGACGACATCGATGATTTCCCGCGAGATGTCTCCGGCGCCTGTTAGGGAAGAGAGGCTTCCGTCCCAGCCGCAGTGGAGTCAGCAGGAGACGAGAGAGTTCATTGGGATACGCGCGGAGTTGGAGAGGGACTTCACTGCTTCGAAGAGGAATAAGACGCTTTGGGAAGTGGTGAGCGCTAAGATGAGGGAGAGAGGGTATAGGAGGAGCCCTGAACAATGTAAATGCAAGTGGAAGAATCTTGTTAATCGCTATAAGGGAAAAGAGACATCTGATCCAGAGCATGGCAAGCAATGCCCCTTTTTTGAAGAATTGCACGCAGTTTTTACTGAAAGAGCACATAACATGCAACGGTTACTTCTTGAATCTGAAACCCGTCCAGCTCAAGCAAAGAAAGGAGTGAAAAGAACAAGTGGATATCGATCCTCAGAGGAATTCTCAGAAGACGATGAGGAAGTTGAAGATGACAGTGAAGAGGAGAAACCAGCAAGAAGCAATACACGTAAAAGGAAAGCTAGCAAAATTGCAATGGAGAAGTCTTCAAGAGCAAACAATGCAAGCAGTAGTACTGGTAATGTTCAGGAAATGCTCAAGGATTTTTTCCAGCAGCAACTAAGGATGGAGATGCAGTGGAGGGAGATGATGGAAAGGCGTGCACATGAAAGACAATTGTTTGAACAGGAATGGCGACAGTCAATGGAAAAGCTTGAAAGGGAGAGGTTAATGATTGAACAGGAATGGAGGGAGAGAGAAGAACATAGAAGACTGAGGGAAGAGAGTAGGGCAGAGAGAAGGGATGCTCTGTTGACGACTCTTTTAAACAGGCTCACTCATGAATCTAACTAA 918 0.4728 MYGGGGGDDALAARLGLISPSLLIPTTSMISREMSPAPVREERLPSQPQWSQQETREFIGIRAELERDFTASKRNKTLWEVVSAKMRERGYRRSPEQCKCKWKNLVNRYKGKETSDPEHGKQCPFFEELHAVFTERAHNMQRLLLESETRPAQAKKGVKRTSGYRSSEEFSEDDEEVEDDSEEEKPARSNTRKRKASKIAMEKSSRANNASSSTGNVQEMLKDFFQQQLRMEMQWREMMERRAHERQLFEQEWRQSMEKLERERLMIEQEWREREEHRRLREESRAERRDALLTTLLNRLTHESN 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06086 305 Coils Coil 250 270 - -
Vifa1g06086 305 MobiDBLite consensus disorder prediction 145 215 - -
Vifa1g06086 305 FunFam Zinc finger and SCAN domain-containing 20 50 111 - -
Vifa1g06086 305 CDD GT1 48 113 - -
Vifa1g06086 305 PANTHER FI21293P1 42 302 - -
Vifa1g06086 305 MobiDBLite consensus disorder prediction 183 201 - -
Vifa1g06086 305 Pfam Myb/SANT-like DNA-binding domain 48 131 IPR044822 -
Vifa1g06086 305 Gene3D - 50 111 - -
Vifa1g06086 305 MobiDBLite consensus disorder prediction 34 53 - -
Vifa1g06086 305 SMART sant 46 108 IPR001005 -
Vifa1g06086 305 ProSiteProfiles Myb-like domain profile. 50 106 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06086 Vifa-Chr1 951433187 951436959 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06086 48 305 Trihelix Transcription Factor Family AT2G38250 46.183 1.06e-49 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifa1g06086 Myb_DNA-bind_4 1.5e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06086 - - gmx:100812635 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06086 1 951433187 951436959 Vifa1g06086 1 951433187 951436959 ECH