Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06081 ATGGAGAACTATGAGGTTCTAGAGGAGCTTCACAACGTCGAAGCCGAGATAGAAGATGTTCAAGAACAAATTAGGGCGTTAATTGAAAAGCAAGAGAGGTTGTATGAGAGGAAATCTGAGCTGAATTCTATTCTGGAAGCGTGTAAAGAATCTGAAAATGAGGTCAATAATGCAAGTTCAAGTAAGGTGGAGAATTGGGATGGGCCATTTGAATGGGATTCTGAAGCAGCTGATCTTAGATTAAACATCTTTGGCATTTCATCTTACCGCGCAAATCAAAAAGAGATTATTAATGCCATATTGAGTGGAAGAGATGTTCTGGTTATTATGGCTGCAGGTGGTGGCAAGAGCCTCTGCTACCAGCTTCCTGCTGTTCTTCGTAATGGAATCGCTCTAGTTGTCAGTCCTTTGCTTTCGCTAATTCAAGATCAGGTAATGGGTTTGACTGCTTTGGGCATCCCAGCATATATGTTAACTTCGACAACAAAAAAGATATCAAAAAGCAAGAGGTTTATGTCAAAACTTGAAAAGTGCCATCACGCTGGTCGTCTTTCTCTTATTTCAATTGATGAGGCACATTGCTGTAGTCAATGGGGTCACGACTTTCGACCTGATTACAAGAACCTTGGTATTCTCAAGACACAGTTCCCTAATGTTCCTATGGTTGCTTTGACTGCAACTGCTACTCAGAGGGTCCAAAATGATCTGGTTGAGATGTTGCACATTCGTAGATGTGTCAAATTTGTCAGCACAGTCAATAGGCCAAATTTATTTTATATGGTAAAGGAAAAGTCATCCGTCAGTAAGGTGGTTGTTGATGAAATTGCCGAATTCATTAAAGAATCTTATCCAAATCGCGAATCAGGGATTGTTTATTGCTTCTCTAGGAAGGAATGTGAACTGGTTGCAAAGGAGCTAAGGGAGAGAGGTATTTCTGCTGGTCATTATCATGCAGATATGGATGTAAATGATCGTGAAAAAGTACATATGCGGTGGAGCAGTAACAAGCTGCAGGTCATAGTTGGTACGGTAGCTTTTGGCATGGGAATCAACAAACCAGATGTCAGGTTTGTCATCCATCACAGCTTGAGTAAATCAATGGAAACGTACTACCAGGAAAGTGGTCGAGCTGGCCGAGACGGGCTTCCTTCTGAATGCCTATTATACTTCAGACCTGGTGATGTTCCCCGTCAGAGTTCAATGGTCTTCTACGAAAATTCAGGACTGCAGAACCTCTATGACATAGTACGGTTTTGTCAGTCCAAAAGACAATGCCGGCGAAGTGCCTTTTTCCGGCATTTTGCTGAGCCATTACAAGAATGCAATGGGATGTGCGACATTTGTGCATTCTCAAGTGAGGTGAAGGAAGTGGATGTCTCTCGGCATGCAAAATTGATGGTTTCTTTGTTGCAAGATATTCAGGCAAGTGATCAGAGGTCAACAATGTTGCAATTAGTTGAAAAAATGAAAACAAAACAGAAGGAAATAGGTTCTGACTTAAAACGAGAGGAAATGGAGCAGCTCATCTTACACCTTTTACTGGAGCGAGTTCTGAAAGAAGAATTTCAGCATACAGCTTATTCTACAAATGCTTACATTACTTTAGGGCCATTGGCGAAACAAATTTTGCAAGGGAAGAAGACCGTGAAGCTTGAGGTTTCTACAGAACAGAAAACTAAAGCTTCTGAAAGATTGAAACGCTGCCTCGGGTCGTCTGGCTTGGAGCTAAAGCTTGATGAGCTGAGAAAAGAACTTTCTTCCATTCATGGAGGAATACTTCCACACTCTGTCTTGTCTACTCAACAAATTAGCTTACTATGTTCTCAAAAACCAAATTCACTGGAACAGTTGGAGAAAGTAATTGGAAAGTTGAAGACAGAAAAGTATGGAAATAAGATTCTCGAGCAAATTCTAAACTATTCTGATTTCAAGCCGACTGATGAACAAGTAAGTGATGGTAGAGCTGCAAAAAGGTCAAAGACCAAGAAGAACCTTGTTCTTATTGAATCTAGTGAAGATGAAGCATGA 2028 0.4093 MENYEVLEELHNVEAEIEDVQEQIRALIEKQERLYERKSELNSILEACKESENEVNNASSSKVENWDGPFEWDSEAADLRLNIFGISSYRANQKEIINAILSGRDVLVIMAAGGGKSLCYQLPAVLRNGIALVVSPLLSLIQDQVMGLTALGIPAYMLTSTTKKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPMVALTATATQRVQNDLVEMLHIRRCVKFVSTVNRPNLFYMVKEKSSVSKVVVDEIAEFIKESYPNRESGIVYCFSRKECELVAKELRERGISAGHYHADMDVNDREKVHMRWSSNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDVPRQSSMVFYENSGLQNLYDIVRFCQSKRQCRRSAFFRHFAEPLQECNGMCDICAFSSEVKEVDVSRHAKLMVSLLQDIQASDQRSTMLQLVEKMKTKQKEIGSDLKREEMEQLILHLLLERVLKEEFQHTAYSTNAYITLGPLAKQILQGKKTVKLEVSTEQKTKASERLKRCLGSSGLELKLDELRKELSSIHGGILPHSVLSTQQISLLCSQKPNSLEQLEKVIGKLKTEKYGNKILEQILNYSDFKPTDEQVSDGRAAKRSKTKKNLVLIESSEDEA 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06081 675 Gene3D - 454 555 IPR036388 -
Vifa1g06081 675 Pfam HRDC domain 577 636 IPR002121 GO:0003676
Vifa1g06081 675 FunFam ATP-dependent DNA helicase 454 554 - -
Vifa1g06081 675 NCBIfam RecQ family ATP-dependent DNA helicase 162 479 IPR004589 GO:0004386|GO:0006310
Vifa1g06081 675 SMART helicmild6 300 381 IPR001650 -
Vifa1g06081 675 SMART ultradead3 85 262 IPR014001 -
Vifa1g06081 675 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 397 IPR027417 -
Vifa1g06081 675 Gene3D - 45 163 IPR027417 -
Vifa1g06081 675 Gene3D - 164 253 IPR027417 -
Vifa1g06081 675 Pfam Helicase conserved C-terminal domain 277 380 IPR001650 -
Vifa1g06081 675 ProSiteProfiles HRDC domain profile. 568 647 IPR002121 GO:0003676
Vifa1g06081 675 FunFam ATP-dependent DNA helicase 572 642 - -
Vifa1g06081 675 Coils Coil 3 37 - -
Vifa1g06081 675 Gene3D HRDC domain 572 640 IPR044876 -
Vifa1g06081 675 Pfam DEAD/DEAH box helicase 91 233 IPR011545 GO:0003676|GO:0005524
Vifa1g06081 675 Pfam RecQ zinc-binding 393 449 IPR032284 -
Vifa1g06081 675 Pfam RQC domain 455 559 IPR018982 GO:0006260|GO:0006281|GO:0043138
Vifa1g06081 675 Gene3D - 254 450 IPR027417 -
Vifa1g06081 675 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 271 420 IPR001650 -
Vifa1g06081 675 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 246 IPR014001 -
Vifa1g06081 675 PANTHER DNA HELICASE RECQ FAMILY MEMBER 66 630 - -
Vifa1g06081 675 FunFam ATP-dependent DNA helicase 254 450 - -
Vifa1g06081 675 ProSiteProfiles Pumilio RNA-binding repeat profile. 616 652 IPR001313 GO:0003723
Vifa1g06081 675 CDD SF2_C_RecQ 254 390 - -
Vifa1g06081 675 SMART RQC_2 458 555 IPR018982 GO:0006260|GO:0006281|GO:0043138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06081 Vifa-Chr1 949603644 949632564 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06081 289 395 Eukaryotic Initiation Factors Gene Family AT3G19760 21.495 7.78e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06081 K10899 - gmx:100817635 1113.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06081 1 949603644 949632564 Vifa1g06081 1 949603644 949632564 ECH