Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g06076 | ATGGGATATGATTCTGATAGCCCCTCGCGAGATGAAGATGACGAAGAAGAATACGAGGAGTCTGGCAAGGGTAATGGGTTATTTGGGTTCATGTTTGGAAATGTTGATAACTCTGGTGATCTCGATGCTGATTATCTTGATGAGGATGCAAAGGAGCATCTCTCTGCATTGGCTGACAAGCTGGGACCATCACTGACAGATATAGATTTGTCAGGAAAGTCACCACATACACCACATGGCATTGTTGAACAAGACTGTGGTGAAAAGGCTGACAATGCTGTTGATTACGAAGATATTGATGAAGAATATGATGGTCCAGAGACTGAAACGGCAAATGAAGAGGACTATTTATTGCCAAAAAAGGAATTTTTCGCTGCCGAAGCCTCTCTTGAAGCTTTGGAACGCAAAACTTCCGTCTTCGATGATGAAAATTATGATGAAGAATCTGACAAGGAACAAGACTTAGAGAGTAATGATGCTAAAGTTGATAACATCTCTTTAGCTGTAGAGCAGGAGGAGAGCTTTGTAGATGCATCTAAAGGAGGGAGTGCTCTTGAGCATGATGTACAAGTTGGGTCTCCGCAGGCTGAAGAACTGGATACTGATGTTCAAATACCTGAGGAAGGACCCGAAGCTTTAAAAAGATCTATGGCTACACCGTTGCCTGTATTGTACGTGGACGATGGAAAAGTAGTTTTACGTTTCTCTGAAATCTTTGGTATTCAGGAACCTCCTCGAAAGGGAGAAAAGAAAGAGCGTCGGCATTCCACTCCTAGAGATAGATACAAGTCTTCGGATTTATCTGATGATATTGTAGAAGAGGATGAAGAGGAGTTCCTTAAAGGCTTCTCTCAGAGTCTCACACTCAGTAAACAGGTTTGTGTAATCGATACTGATGTATCAGAAAACGATAATGTTGACTTGGAATTTCCAAAGTTTGGATTTCTTCACGGAGATGCCTCACTTACTGCCAAAGATGACCGGCAACCAAAGGACTCTTGTCTTAGTGGTGAACCAATGAAAGGGGATTTCGCAGATGAACTTTCTTGGAAAGATCATCCCCTCATGTTGGCCAACTTTTATCCTCTTGACCAGCGAGACTGGGAAGATGAAATCCTTTGGGGCAACTCTCCTGTTGCAAGTGATAATGATAATAATATCTGTGAAATTTCTGGACCTGAATTGAGAGCTTCTGGTGATGGTGAAATAGAAATTGAAAGTGGGATACAAAATCTTCAGTCAGATCCCCATAAGATACTGGAGAAGAAGGATCATAATGTATTCATTTGCTGCTCTCCTGTTTCATTGGACCCCTTTGACTCAAGGGATTCTAATGGGGCTAAAACCAATTCAATGCCCGAAAGTCCATTTCATCCCCAACTTCTGAGGCTAGAAGTAGACAGTTCTCATCTTGCAGATGAAAGAGGGGCAGATATATCTGAGAATCATAATCAAAGTGGTCAAGTAAAGCGTTTGACCAAGGTTATGTCACAAAACAGAGATCTCATGGATGACTCATGGATAAACAAGATAATGTGGGAAGAGCTTGACAGGCCTAAGGTGAAACCAAAGCTTATATTTGATCTTCAGGATAATCAGATGCACTTCGAAGTTCTGGATAGCAAGGACGGTACCCATCTTCGCCTTCATGCTGGGGCTATGATCTTAGCCCGCTCTTTGAATTCCACTAACGCGGACTCTTCTGAGCTACCGGGACTTGGAGGTCAATATGGATGGAGACACGTTGCTAATGACAAACATTATTCAAATCGGAAAACTTCTCAGCAACTGAAATCAAACTCAAAAAAGCGCTCTGCTCACGGTGTCAAAATTTTTCACTCGCAACCTGCACTGAAACTGCAGACCATGAAATTGAAGTTGAGCAATAAAGATATTGCAAATTTTCACCGGCCTAGAGCACTGTGGTATCCCCATGATAATGAGGTGGCTGTTAAAGAACAAGGAAAATTACCAACAAAAGGATCCATGAAAATTATTATGAAAAGCTTGGGTGGTAAGGGGTGTAAACTGCACGTCAATGCTGAAGAAACTATCTCTTCTGTTAAAGCAAAAGCTTCCAAAAAGCTAGATTTCAAGGCATCAGAAGCAGTGAAAATATTTTATTTGGGTGGGGAGCTTGAAGATCACATATCACTTATTGCACAAAATGTTCAGCCAAACTCCTTGTTACATCTTGTCCGTACAAAGATACATTTATGGCCTAGGGCACAAAGAGTTCCTGGTGAGGACAAGTCGTTGCGTCCTCCGGGAGCATTCAAGAAAAAATCTGATCTGTCTGTAAAAGATGGACATGTGTTTCTTATGGAGTATTGTGAAGAAAGGCCTTTACTTCTGAGCAATGTTGGAATGGGCGCAAGACTTTGCACATATTATCAAAAAAGTTCACCGGAAGACCAATCTGGGTCCTTATTACGCAACACAGATAGTAGCTTGGGGCATGTTATTTCTCTGGACCCTGCCGACAAATCTCCTTTTCTTGGTGATTTGAAACCTGGTAGCAGTCAGTCATCACTCGAGACCAATATGTATAGAGCACCCATATTTACTCATAAAGTTCCACCAAATGACTACCTGCTGGTTCGTTCTTCAAAGGGAAAGCTATCATTAAGGCGCATTGATAAAGTTAATGTTGTTGGACAGCAGGAGCCTCTCATGGAGGTGTTCTCGCCCGGAAGTAAGAATCTTCAGACTTTCATGATGAACAGGCTATTGGTACACATGTGCCGTGAGTTCCAAGCTGCAGAGAAGCAGCACTTGTCTCCATACATTCGCATTGACTACTTTCTTTCACAGTTTCCCTTCCTATCAGAAGCCTCATTTCGTAAGAGGATCAAGGAATATGCTAATTTACAGAGAGGTGCACATGGGCAATCCATTTTTGTTAAAAAGCGTAATTTCCGCATGTGGTCGGAGGATGAATTGAGAAAAATGGTGACACCAGAGCTTGTCTGTGCTTTTGAAAGCATGCAAGCTGGCCTCTACCGCTTAAAACATTTAGGAATTACTGAAACACATCCTAATAATATTTCGTCTGCAATGAGTCGGCTTCCTGATGAAGCAATAGCACTGGCTGCTGCATCACACATTGAGAGGGAACTGCAAATTACTCCATGGAACTTGAGTAGCAATTTTGTTGCCTGTACAACTCAGGGTAAGGAAAATATTGAACGGATGGAAATTACTGGCGTTGGTGATCCATCAGGCCGCGGCTTGGGTTTTAGCTATGCTAGGGCACCTCCAAAGGCACCAGTGTCTAGTGCAGTGGTGAAGAAAAAAGCAGCTGCTGGCAGGGGAGGTTCCACTGTTACTGGTACGGATGCTGATTTACGTAGATTAAGCATGGAGGCTGCACGAGAGGTACTTCTTAAATTCAATGTTCCTGAGGAAGTCATTGCAAAGCAAACCAGATGGCATCGCATTGCTATGATACGTAAACTATCAAGTGAGCAAGCTGCGTCTGGGGTTAAGGTTGATCCAACAACTATAGGAAAATATGCCCGTGGTCAGCGAATGTCCTTTCTTCAGTTACAGCAGCAGACCAGAGAGAAGTGCCAAGAGATTTGGGATAGGCAAGTTCAGAGTTTGGCAGCTTTAAATGGTGATGATAATGAGAGTGATTCAGAAGGAAATAGTGATCTAGATTCTTTTGCTGGAGATCTGGAAAATTTGCTTGATGCTGAGGAATTTGAAGAGGGAGAAGAAGGTACTAATGACTTAAAACGTGATAAGGGAGACGGTGTTAAGGGTCTTAAAATGAGAAGGCGCACAACTTTGGCTCAGGCAGAGGAGGAAATAGAAGATGAAGCAGCCGAGGCCACTGAATTATGCAGGCTGCTTATGGATGGTATGATATCTTATTGGTTATTGAAATATCATTCCATACCTTTATCGATGACGGAGCTTGCCGGAAGAAAAAGAAGAACACTGGGCACTGAACAAGTAAAGCAAATAACAAATGCAACATTGCAACTCGATGGAACTAATCATTTTAAGGAGGATGCAATTACAGATCTTAGGGAGGATGATAAATTTTCTTCTAAGAAAAGCAAATCAGTTAAGGTCAATAAAGCAAAGAAGAGTGACATTTCACCTATTAGTCTATCAAATAAAAAAATCAAACTAAATATGGGAGAAGGAATCAAGAACCAGGTATTTAAGGAGAAAAAACCATCAAGGGAAACTTTCGTTTGTGGAGCATGTGGCCAGCTTGGGCACATGCGAACGAACAAGAATTGTCCGAAATATGGTGAAGATCTAGAAGCACAACTTGAACCTATGGACATGGAAAAATTAACTGGAAGATCCAGCTTTGTTGATTCTTCTAGCCAGTCTCAGCATAAACTCTCCTCCAAAAAGTCAATATCAAAGATTGTAACAAAAATGGCTCCAGTTGAGAATTCAACAAAAATTCCGTTGAAGTTCAAATGCAGTTCAACAGAGAAATCTTCTGATAGACCTGCAATAGAAACCCTGCAGAGTTCTGACAAGCCAGTCACTTCTGACTCAGAAACTGCTAAGTCTGCTAAGATTAGTAAGATAATTATTCCAAACAAAGTGAAATCAGAAGATACACAGGCTGAATCTCTTAAGCATGCTATTGTTATACGCCCTCCTACTGATCCAGGTAGAGGTCAGGTTGATTCTCATAAGTTCCCAATTAAAATCCGTCCGCCTGCAGAAATAGATAGGGAGCAAAGTCACAAAAAGATTGTTATAAAGCGTACAAAGGATGTTGCTGATCTGGAACTTGACAGTCCTGGTGGAAACACACGACTTGAAAACAGAAAAACTAAAAGAATTGTGGAATTGGCGAATTTTGAGAAGCACAGAAAGCAGGACACCATGTATTCAACTGAAAGTATGGTAAAATGGAATCCTAAAGAGGATAGAAGATGGTGGGAAGAACAAGAGAAACGAAGAAATGAAGTGAGACTTAGAGAAAAGAATGCAAAGAGGTATGGCACAGAAGAAAGGAAGATGCGCAAGGAACGAGAAAGGTTAGATGAGTTAAAAAGATATGAACAAGAAAGGTTAGATGAGTTAAAAAGATATGAAGAAGATATTAGAAGAGAGAGGGAAGAGGAAGAACGACAAAAAGCTAAGAAGAAAAAGAAAAAGAGAAAGCCCGATTTAAGAGATGAGTATTTAGACGATCCCAGGGAAAGAAGATATGGTAAGAGGATGCTAGAAAGAGAACGAAGTGGAAAACGGAGATCAGTTGTTGAGACAGGAAAGATTAGTGGAGATTTTCTGCCGCCAACTAAACGCCGAAGAGGGGGAGGAGGAGAGGTTGGTTTGGCAAATATCTTGGAGAGTATTGTGGATGCCATTGTGAAAGACAGGCACGATCTGTCTTATCTCTTTGTGAAACCAGTGCCCAAGAAAGAGGCCCCTGACTACCTGGATATCATAGAGACACCTATGGATCTTTCAAAAATCAGGCAACGGGTACGTAATATGGAGTACAAAAGTCGCGAAGACTTCAGACATGATGTATGGCAAATTACTTTTAATGCCCATAAATATAATGATGGACGAAATCCTGGAATCCCTCCAGTTGCGGATATGCTTTTGGAATATTGTGATTATTTGTTGAATGAGAATGATGATAATCTTACTGCCGCTGAAGCTGGCATTGAAATTAAAGATTTCTAA | 5676 | 0.4138 | MGYDSDSPSRDEDDEEEYEESGKGNGLFGFMFGNVDNSGDLDADYLDEDAKEHLSALADKLGPSLTDIDLSGKSPHTPHGIVEQDCGEKADNAVDYEDIDEEYDGPETETANEEDYLLPKKEFFAAEASLEALERKTSVFDDENYDEESDKEQDLESNDAKVDNISLAVEQEESFVDASKGGSALEHDVQVGSPQAEELDTDVQIPEEGPEALKRSMATPLPVLYVDDGKVVLRFSEIFGIQEPPRKGEKKERRHSTPRDRYKSSDLSDDIVEEDEEEFLKGFSQSLTLSKQVCVIDTDVSENDNVDLEFPKFGFLHGDASLTAKDDRQPKDSCLSGEPMKGDFADELSWKDHPLMLANFYPLDQRDWEDEILWGNSPVASDNDNNICEISGPELRASGDGEIEIESGIQNLQSDPHKILEKKDHNVFICCSPVSLDPFDSRDSNGAKTNSMPESPFHPQLLRLEVDSSHLADERGADISENHNQSGQVKRLTKVMSQNRDLMDDSWINKIMWEELDRPKVKPKLIFDLQDNQMHFEVLDSKDGTHLRLHAGAMILARSLNSTNADSSELPGLGGQYGWRHVANDKHYSNRKTSQQLKSNSKKRSAHGVKIFHSQPALKLQTMKLKLSNKDIANFHRPRALWYPHDNEVAVKEQGKLPTKGSMKIIMKSLGGKGCKLHVNAEETISSVKAKASKKLDFKASEAVKIFYLGGELEDHISLIAQNVQPNSLLHLVRTKIHLWPRAQRVPGEDKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNVGMGARLCTYYQKSSPEDQSGSLLRNTDSSLGHVISLDPADKSPFLGDLKPGSSQSSLETNMYRAPIFTHKVPPNDYLLVRSSKGKLSLRRIDKVNVVGQQEPLMEVFSPGSKNLQTFMMNRLLVHMCREFQAAEKQHLSPYIRIDYFLSQFPFLSEASFRKRIKEYANLQRGAHGQSIFVKKRNFRMWSEDELRKMVTPELVCAFESMQAGLYRLKHLGITETHPNNISSAMSRLPDEAIALAAASHIERELQITPWNLSSNFVACTTQGKENIERMEITGVGDPSGRGLGFSYARAPPKAPVSSAVVKKKAAAGRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEVIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTIGKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLAALNGDDNESDSEGNSDLDSFAGDLENLLDAEEFEEGEEGTNDLKRDKGDGVKGLKMRRRTTLAQAEEEIEDEAAEATELCRLLMDGMISYWLLKYHSIPLSMTELAGRKRRTLGTEQVKQITNATLQLDGTNHFKEDAITDLREDDKFSSKKSKSVKVNKAKKSDISPISLSNKKIKLNMGEGIKNQVFKEKKPSRETFVCGACGQLGHMRTNKNCPKYGEDLEAQLEPMDMEKLTGRSSFVDSSSQSQHKLSSKKSISKIVTKMAPVENSTKIPLKFKCSSTEKSSDRPAIETLQSSDKPVTSDSETAKSAKISKIIIPNKVKSEDTQAESLKHAIVIRPPTDPGRGQVDSHKFPIKIRPPAEIDREQSHKKIVIKRTKDVADLELDSPGGNTRLENRKTKRIVELANFEKHRKQDTMYSTESMVKWNPKEDRRWWEEQEKRRNEVRLREKNAKRYGTEERKMRKERERLDELKRYEQERLDELKRYEEDIRREREEEERQKAKKKKKKRKPDLRDEYLDDPRERRYGKRMLERERSGKRRSVVETGKISGDFLPPTKRRRGGGGEVGLANILESIVDAIVKDRHDLSYLFVKPVPKKEAPDYLDIIETPMDLSKIRQRVRNMEYKSREDFRHDVWQITFNAHKYNDGRNPGIPPVADMLLEYCDYLLNENDDNLTAAEAGIEIKDF | 1891 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g06076 | 1891 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Vifa1g06076 | 1891 | Gene3D | - | 645 | 735 | - | - | |
Vifa1g06076 | 1891 | Coils | Coil | 1660 | 1715 | - | - | |
Vifa1g06076 | 1891 | Pfam | Zinc knuckle | 1404 | 1427 | IPR041670 | - | |
Vifa1g06076 | 1891 | MobiDBLite | consensus disorder prediction | 1716 | 1732 | - | - | |
Vifa1g06076 | 1891 | SUPERFAMILY | Bromodomain | 1759 | 1878 | IPR036427 | GO:0005515 | |
Vifa1g06076 | 1891 | FunFam | Transcription initiation factor TFIID subunit 1 | 645 | 735 | - | - | |
Vifa1g06076 | 1891 | SMART | bromo_6 | 1766 | 1877 | IPR001487 | GO:0005515 | |
Vifa1g06076 | 1891 | MobiDBLite | consensus disorder prediction | 68 | 89 | - | - | |
Vifa1g06076 | 1891 | MobiDBLite | consensus disorder prediction | 173 | 203 | - | - | |
Vifa1g06076 | 1891 | Pfam | Protein of unknown function (DUF3591) | 582 | 1149 | IPR022591 | - | |
Vifa1g06076 | 1891 | ProSitePatterns | Bromodomain signature. | 1792 | 1849 | IPR018359 | - | |
Vifa1g06076 | 1891 | PRINTS | Bromodomain signature | 1820 | 1838 | IPR001487 | GO:0005515 | |
Vifa1g06076 | 1891 | PRINTS | Bromodomain signature | 1804 | 1820 | IPR001487 | GO:0005515 | |
Vifa1g06076 | 1891 | PRINTS | Bromodomain signature | 1838 | 1857 | IPR001487 | GO:0005515 | |
Vifa1g06076 | 1891 | PRINTS | Bromodomain signature | 1790 | 1803 | IPR001487 | GO:0005515 | |
Vifa1g06076 | 1891 | CDD | UDM1_RNF168_RNF169-like | 1632 | 1687 | - | - | |
Vifa1g06076 | 1891 | Gene3D | - | 1688 | 1890 | IPR036427 | GO:0005515 | |
Vifa1g06076 | 1891 | PANTHER | TRANSCRIPTION INITIATION FACTOR TFIID | 10 | 1887 | IPR040240 | GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025 | |
Vifa1g06076 | 1891 | SUPERFAMILY | Ubiquitin-like | 633 | 733 | IPR029071 | - | |
Vifa1g06076 | 1891 | ProSiteProfiles | Ubiquitin domain profile. | 663 | 733 | IPR000626 | GO:0005515 | |
Vifa1g06076 | 1891 | MobiDBLite | consensus disorder prediction | 135 | 160 | - | - | |
Vifa1g06076 | 1891 | ProSiteProfiles | Bromodomain profile. | 1787 | 1857 | IPR001487 | GO:0005515 | |
Vifa1g06076 | 1891 | Pfam | Bromodomain | 1787 | 1853 | IPR001487 | GO:0005515 | |
Vifa1g06076 | 1891 | CDD | Bromodomain | 1776 | 1872 | - | - | |
Vifa1g06076 | 1891 | Gene3D | - | 19 | 65 | IPR036741 | - | |
Vifa1g06076 | 1891 | Pfam | TATA box-binding protein binding | 15 | 58 | IPR009067 | - | |
Vifa1g06076 | 1891 | MobiDBLite | consensus disorder prediction | 1696 | 1732 | - | - | |
Vifa1g06076 | 1891 | SUPERFAMILY | TAF(II)230 TBP-binding fragment | 21 | 59 | IPR036741 | - | |
Vifa1g06076 | 1891 | MobiDBLite | consensus disorder prediction | 1483 | 1514 | - | - | |
Vifa1g06076 | 1891 | Coils | Coil | 1258 | 1285 | - | - | |
Vifa1g06076 | 1891 | MobiDBLite | consensus disorder prediction | 244 | 268 | - | - | |
Vifa1g06076 | 1891 | MobiDBLite | consensus disorder prediction | 589 | 608 | - | - | |
Vifa1g06076 | 1891 | Pfam | Ubiquitin family | 667 | 735 | IPR000626 | GO:0005515 | |
Vifa1g06076 | 1891 | SMART | ubq_7 | 663 | 735 | IPR000626 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g06076 | Vifa-Chr1 | 948556396 | 948574514 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g06076 | 663 | 733 | Cytoplasmic Ribosomal Protein Gene Family | AT3G62250 | 38.028 | 7.36e-06 | 46.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g06076 | K03125 | - | gmx:100780733 | 2884.36 |