Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06075 ATGGGATATGATTCTGATAGCCCCTCGCGAGATGAAGATGACGAAGAAGAATACGAGGAGTCTGGCAAGGGTAATGGGTTATTTGGGTTCATGTTTGGAAATGTTGATAACTCTGGTGATCTCGATGCTGATTATCTTGATGAGGATGCAAAGGAGCATCTCTCTGCATTGGCTGACAAGCTGGGACCATCACTGACAGATATAGATTTGTCAGGAAAGTCACCACATACACCACATGGCATTGTTGAACAAGACTGTGGTGAAAAGGCTGACAATGCTGTTGATTACGAAGATATTGATGAAGAATATGATGGTCCAGAGACTGAAACGGCAAATGAAGAGGACTATTTATTGCCAAAAAAGGAATTTTTCGCTGCCGAAGCCTCTCTTGAAGCTTTGGAACGCAAAACTTCCGTCTTCGATGATGAAAATTATGATGAAGAATCTGACAAGGAACAAGACTTAGAGAGTAATGATGCTAAAGTTGATAACATCTCTTTAGCTGAGCAGGAGGAGAGCTTTGTAGATGCATCTAAAGGAGGGAGTGCTCTTGAGCATGATGTACAAGTTGGGTCTCCGCAGGCTGAAGAACTGGATACTGATGTTCAAATACCTGAGGAAGGACCCGAAGCTTTAAAAAGATCTATGGCTACACCGTTGCCTGTATTGTACGTGGACGATGGAAAAGTAGTTTTACGTTTCTCTGAAATCTTTGGTATTCAGGAACCTCCTCGAAAGGGAGAAAAGAAAGAGCGTCGGCATTCCACTCCTAGAGATAGATACAAGTCTTCGGATTTATCTGATGATATTGTAGAAGAGGATGAAGAGGAGTTCCTTAAAGGCTTCTCTCAGAGTCTCACACTCAGTAAACAGGTTTGTGTAATCGATACTGATGTATCAGAAAACGATAATGTTGACTTGGAATTTCCAAAGTTTGGATTTCTTCACGGAGATGCCTCACTTACTGCCAAAGATGACCGGCAACCAAAGGACTCTTGTCTTAGTGGTGAACCAATGAAAGGGGATTTCGCAGATGAACTTTCTTGGAAAGATCATCCCCTCATGTTGGCCAACTTTTATCCTCTTGACCAGCGAGACTGGGAAGATGAAATCCTTTGGGGCAACTCTCCTGTTGCAAGTGATAATGATAATAATATCTGTGAAATTTCTGGACCTGAATTGAGAGCTTCTGGTGATGGTGAAATAGAAATTGAAAGTGGGATACAAAATCTTCAGTCAGATCCCCATAAGATACTGGAGAAGAAGGATCATAATGTATTCATTTGCTGCTCTCCTGTTTCATTGGACCCCTTTGACTCAAGGGATTCTAATGGGGCTAAAACCAATTCAATGCCCGAAAGTCCATTTCATCCCCAACTTCTGAGGCTAGAAGTAGACAGTTCTCATCTTGCAGATGAAAGAGGGGCAGATATATCTGAGAATCATAATCAAAGTGGTCAAGTAAAGCGTTTGACCAAGGTTATGTCACAAAACAGAGATCTCATGGATGACTCATGGATAAACAAGATAATGTGGGAAGAGCTTGACAGGCCTAAGGTGAAACCAAAGCTTATATTTGATCTTCAGGATAATCAGATGCACTTCGAAGTTCTGGATAGCAAGGACGGTACCCATCTTCGCCTTCATGCTGGGGCTATGATCTTAGCCCGCTCTTTGAATTCCACTAACGCGGACTCTTCTGAGCTACCGGGACTTGGAGGTCAATATGGATGGAGACACGTTGCTAATGACAAACATTATTCAAATCGGAAAACTTCTCAGCAACTGAAATCAAACTCAAAAAAGCGCTCTGCTCACGGTGTCAAAATTTTTCACTCGCAACCTGCACTGAAACTGCAGACCATGAAATTGAAGTTGAGCAATAAAGATATTGCAAATTTTCACCGGCCTAGAGCACTGTGGTATCCCCATGATAATGAGGTGGCTGTTAAAGAACAAGGAAAATTACCAACAAAAGGATCCATGAAAATTATTATGAAAAGCTTGGGTGGTAAGGGGTGTAAACTGCACGTCAATGCTGAAGAAACTATCTCTTCTGTTAAAGCAAAAGCTTCCAAAAAGCTAGATTTCAAGGCATCAGAAGCAGTGAAAATATTTTATTTGGGTGGGGAGCTTGAAGATCACATATCACTTATTGCACAAAATGTTCAGCCAAACTCCTTGTTACATCTTGTCCGTACAAAGATACATTTATGGCCTAGGGCACAAAGAGTTCCTGGTGAGGACAAGTCGTTGCGTCCTCCGGGAGCATTCAAGAAAAAATCTGATCTGTCTGTAAAAGATGGACATGTGTTTCTTATGGAGTATTGTGAAGAAAGGCCTTTACTTCTGAGCAATGTTGGAATGGGCGCAAGACTTTGCACATATTATCAAAAAAGTTCACCGGAAGACCAATCTGGGTCCTTATTACGCAACACAGATAGTAGCTTGGGGCATGTTATTTCTCTGGACCCTGCCGACAAATCTCCTTTTCTTGGTGATTTGAAACCTGGTAGCAGTCAGTCATCACTCGAGACCAATATGTATAGAGCACCCATATTTACTCATAAAGTTCCACCAAATGACTACCTGCTGGTTCGTTCTTCAAAGGGAAAGCTATCATTAAGGCGCATTGATAAAGTTAATGTTGTTGGACAGCAGGAGCCTCTCATGGAGGTGTTCTCGCCCGGAAGTAAGAATCTTCAGACTTTCATGATGAACAGGCTATTGGTACACATGTGCCGTGAGTTCCAAGCTGCAGAGAAGCAGCACTTGTCTCCATACATTCGCATTGACTACTTTCTTTCACAGTTTCCCTTCCTATCAGAAGCCTCATTTCGTAAGAGGATCAAGGAATATGCTAATTTACAGAGAGGTGCACATGGGCAATCCATTTTTGTTAAAAAGCGTAATTTCCGCATGTGGTCGGAGGATGAATTGAGAAAAATGGTGACACCAGAGCTTGTCTGTGCTTTTGAAAGCATGCAAGCTGGCCTCTACCGCTTAAAACATTTAGGAATTACTGAAACACATCCTAATAATATTTCGTCTGCAATGAGTCGGCTTCCTGATGAAGCAATAGCACTGGCTGCTGCATCACACATTGAGAGGGAACTGCAAATTACTCCATGGAACTTGAGTAGCAATTTTGTTGCCTGTACAACTCAGGGTAAGGAAAATATTGAACGGATGGAAATTACTGGCGTTGGTGATCCATCAGGCCGCGGCTTGGGTTTTAGCTATGCTAGGGCACCTCCAAAGGCACCAGTGTCTAGTGCAGTGGTGAAGAAAAAAGCAGCTGCTGGCAGGGGAGGTTCCACTGTTACTGGTACGGATGCTGATTTACGTAGATTAAGCATGGAGGCTGCACGAGAGGTACTTCTTAAATTCAATGTTCCTGAGGAAGTCATTGCAAAGCAAACCAGATGGCATCGCATTGCTATGATACGTAAACTATCAAGTGAGCAAGCTGCGTCTGGGGTTAAGGTTGATCCAACAACTATAGGAAAATATGCCCGTGGTCAGCGAATGTCCTTTCTTCAGTTACAGCAGCAGACCAGAGAGAAGTGCCAAGAGATTTGGGATAGGCAAGTTCAGAGTTTGGCAGCTTTAAATGGTGATGATAATGAGAGTGATTCAGAAGGAAATAGTGATCTAGATTCTTTTGCTGGAGATCTGGAAAATTTGCTTGATGCTGAGGAATTTGAAGAGGGAGAAGAAGGTACTAATGACTTAAAACGTGATAAGGGAGACGGTGTTAAGGGTCTTAAAATGAGAAGGCGCACAACTTTGGCTCAGGCAGAGGAGGAAATAGAAGATGAAGCAGCCGAGGCCACTGAATTATGCAGGCTGCTTATGGATGATGACGGAGCTTGCCGGAAGAAAAAGAAGAACACTGGGGTTATGGTGGATGCAAGAAGATTGATACCGAAACTACAACCAAAATTTGTCTTTGACAGCACTGAACAAGTAAAGCAAATAACAAATGCAACATTGCAACTCGATGGAACTAATCATTTTAAGGAGGATGCAATTACAGATCTTAGGGAGGATGATAAATTTTCTTCTAAGAAAAGCAAATCAGTTAAGGTCAATAAAGCAAAGAAGAGTGACATTTCACCTATTAGTCTATCAAATAAAAAAATCAAACTAAATATGGGAGAAGGAATCAAGAACCAGGTATTTAAGGAGAAAAAACCATCAAGGGAAACTTTCGTTTGTGGAGCATGTGGCCAGCTTGGGCACATGCGAACGAACAAGAATTGTCCGAAATATGGTGAAGATCTAGAAGCACAACTTGAACCTATGGACATGGAAAAATTAACTGGAAGATCCAGCTTTGTTGATTCTTCTAGCCAGTCTCAGCATAAACTCTCCTCCAAAAAGTCAATATCAAAGATTGTAACAAAAATGGCTCCAGTTGAGAATTCAACAAAAATTCCGTTGAAGTTCAAATGCAGTTCAACAGAGAAATCTTCTGATAGACCTGCAATAGAAACCCTGCAGAGTTCTGACAAGCCAGTCACTTCTGACTCAGAAACTGCTAAGTCTGCTAAGATTAGTAAGATAATTATTCCAAACAAAGTGAAATCAGAAGATACACAGGCTGAATCTCTTAAGCATGCTATTGTTATACGCCCTCCTACTGATCCAGGTAGAGGTCAGGTTGATTCTCATAAGTTCCCAATTAAAATCCGTCCGCCTGCAGAAATAGATAGGGAGCAAAGTCACAAAAAGATTGTTATAAAGCGTACAAAGGATGTTGCTGATCTGGAACTTGACAGTCCTGGTGGAAACACACGACTTGAAAACAGAAAAACTAAAAGAATTGTGGAATTGGCGAATTTTGAGAAGCACAGAAAGCAGGACACCATGTATTCAACTGAAAGTATGGTAAAATGGAATCCTAAAGAGGATAGAAGATGGTGGGAAGAACAAGAGAAACGAAGAAATGAAGTGAGACTTAGAGAAAAGAATGCAAAGAGGTATGGCACAGAAGAAAGGAAGATGCGCAAGGAACGAGAAAGGTTAGATGAGTTAAAAAGATATGAACAAGAAAGGTTAGATGAGTTAAAAAGATATGAAGAAGATATTAGAAGAGAGAGGGAAGAGGAAGAACGACAAAAAGCTAAGAAGAAAAAGAAAAAGAGAAAGCCCGATTTAAGAGATGAGTATTTAGACGATCCCAGGGAAAGAAGATATGGTAAGAGGATGCTAGAAAGAGAACGAAGTGGAAAACGGAGATCAGTTGTTGAGACAGGAAAGATTAGTGGAGATTTTCTGCCGCCAACTAAACGCCGAAGAGGGGGAGGAGGAGAGGTTGGTTTGGCAAATATCTTGGAGAGTATTGTGGATGCCATTGTGAAAGACAGGCACGATCTGTCTTATCTCTTTGTGAAACCAGTGCCCAAGAAAGAGGCCCCTGACTACCTGGATATCATAGAGACACCTATGGATCTTTCAAAAATCAGGCAACGGGTACGTAATATGGAGTACAAAAGTCGCGAAGACTTCAGACATGATGTATGGCAAATTACTTTTAATGCCCATAAATATAATGATGGACGAAATCCTGGAATCCCTCCAGTTGCGGATATGCTTTTGGAATATTGTGATTATTTGTTGAATGAGAATGATGATAATCTTACTGCCGCTGAAGCTGGCATTGAAATTAAAGATTTCTAA 5685 0.4146 MGYDSDSPSRDEDDEEEYEESGKGNGLFGFMFGNVDNSGDLDADYLDEDAKEHLSALADKLGPSLTDIDLSGKSPHTPHGIVEQDCGEKADNAVDYEDIDEEYDGPETETANEEDYLLPKKEFFAAEASLEALERKTSVFDDENYDEESDKEQDLESNDAKVDNISLAEQEESFVDASKGGSALEHDVQVGSPQAEELDTDVQIPEEGPEALKRSMATPLPVLYVDDGKVVLRFSEIFGIQEPPRKGEKKERRHSTPRDRYKSSDLSDDIVEEDEEEFLKGFSQSLTLSKQVCVIDTDVSENDNVDLEFPKFGFLHGDASLTAKDDRQPKDSCLSGEPMKGDFADELSWKDHPLMLANFYPLDQRDWEDEILWGNSPVASDNDNNICEISGPELRASGDGEIEIESGIQNLQSDPHKILEKKDHNVFICCSPVSLDPFDSRDSNGAKTNSMPESPFHPQLLRLEVDSSHLADERGADISENHNQSGQVKRLTKVMSQNRDLMDDSWINKIMWEELDRPKVKPKLIFDLQDNQMHFEVLDSKDGTHLRLHAGAMILARSLNSTNADSSELPGLGGQYGWRHVANDKHYSNRKTSQQLKSNSKKRSAHGVKIFHSQPALKLQTMKLKLSNKDIANFHRPRALWYPHDNEVAVKEQGKLPTKGSMKIIMKSLGGKGCKLHVNAEETISSVKAKASKKLDFKASEAVKIFYLGGELEDHISLIAQNVQPNSLLHLVRTKIHLWPRAQRVPGEDKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNVGMGARLCTYYQKSSPEDQSGSLLRNTDSSLGHVISLDPADKSPFLGDLKPGSSQSSLETNMYRAPIFTHKVPPNDYLLVRSSKGKLSLRRIDKVNVVGQQEPLMEVFSPGSKNLQTFMMNRLLVHMCREFQAAEKQHLSPYIRIDYFLSQFPFLSEASFRKRIKEYANLQRGAHGQSIFVKKRNFRMWSEDELRKMVTPELVCAFESMQAGLYRLKHLGITETHPNNISSAMSRLPDEAIALAAASHIERELQITPWNLSSNFVACTTQGKENIERMEITGVGDPSGRGLGFSYARAPPKAPVSSAVVKKKAAAGRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEVIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTIGKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLAALNGDDNESDSEGNSDLDSFAGDLENLLDAEEFEEGEEGTNDLKRDKGDGVKGLKMRRRTTLAQAEEEIEDEAAEATELCRLLMDDDGACRKKKKNTGVMVDARRLIPKLQPKFVFDSTEQVKQITNATLQLDGTNHFKEDAITDLREDDKFSSKKSKSVKVNKAKKSDISPISLSNKKIKLNMGEGIKNQVFKEKKPSRETFVCGACGQLGHMRTNKNCPKYGEDLEAQLEPMDMEKLTGRSSFVDSSSQSQHKLSSKKSISKIVTKMAPVENSTKIPLKFKCSSTEKSSDRPAIETLQSSDKPVTSDSETAKSAKISKIIIPNKVKSEDTQAESLKHAIVIRPPTDPGRGQVDSHKFPIKIRPPAEIDREQSHKKIVIKRTKDVADLELDSPGGNTRLENRKTKRIVELANFEKHRKQDTMYSTESMVKWNPKEDRRWWEEQEKRRNEVRLREKNAKRYGTEERKMRKERERLDELKRYEQERLDELKRYEEDIRREREEEERQKAKKKKKKRKPDLRDEYLDDPRERRYGKRMLERERSGKRRSVVETGKISGDFLPPTKRRRGGGGEVGLANILESIVDAIVKDRHDLSYLFVKPVPKKEAPDYLDIIETPMDLSKIRQRVRNMEYKSREDFRHDVWQITFNAHKYNDGRNPGIPPVADMLLEYCDYLLNENDDNLTAAEAGIEIKDF 1894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06075 1894 MobiDBLite consensus disorder prediction 243 267 - -
Vifa1g06075 1894 Pfam Protein of unknown function (DUF3591) 581 1148 IPR022591 -
Vifa1g06075 1894 Coils Coil 1663 1718 - -
Vifa1g06075 1894 SUPERFAMILY Bromodomain 1762 1881 IPR036427 GO:0005515
Vifa1g06075 1894 Gene3D - 19 65 IPR036741 -
Vifa1g06075 1894 Pfam Ubiquitin family 666 734 IPR000626 GO:0005515
Vifa1g06075 1894 MobiDBLite consensus disorder prediction 1699 1748 - -
Vifa1g06075 1894 MobiDBLite consensus disorder prediction 1 29 - -
Vifa1g06075 1894 MobiDBLite consensus disorder prediction 135 202 - -
Vifa1g06075 1894 Pfam Bromodomain 1790 1856 IPR001487 GO:0005515
Vifa1g06075 1894 Gene3D - 644 734 - -
Vifa1g06075 1894 SUPERFAMILY Ubiquitin-like 632 732 IPR029071 -
Vifa1g06075 1894 CDD UDM1_RNF168_RNF169-like 1635 1690 - -
Vifa1g06075 1894 Gene3D - 1691 1893 IPR036427 GO:0005515
Vifa1g06075 1894 MobiDBLite consensus disorder prediction 68 89 - -
Vifa1g06075 1894 Pfam Zinc knuckle 1407 1430 IPR041670 -
Vifa1g06075 1894 ProSiteProfiles Bromodomain profile. 1790 1860 IPR001487 GO:0005515
Vifa1g06075 1894 PRINTS Bromodomain signature 1823 1841 IPR001487 GO:0005515
Vifa1g06075 1894 PRINTS Bromodomain signature 1807 1823 IPR001487 GO:0005515
Vifa1g06075 1894 PRINTS Bromodomain signature 1841 1860 IPR001487 GO:0005515
Vifa1g06075 1894 PRINTS Bromodomain signature 1793 1806 IPR001487 GO:0005515
Vifa1g06075 1894 SMART bromo_6 1769 1880 IPR001487 GO:0005515
Vifa1g06075 1894 MobiDBLite consensus disorder prediction 1719 1748 - -
Vifa1g06075 1894 Coils Coil 1257 1288 - -
Vifa1g06075 1894 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 10 1890 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Vifa1g06075 1894 MobiDBLite consensus disorder prediction 588 607 - -
Vifa1g06075 1894 ProSiteProfiles Ubiquitin domain profile. 662 732 IPR000626 GO:0005515
Vifa1g06075 1894 SMART ubq_7 662 734 IPR000626 GO:0005515
Vifa1g06075 1894 MobiDBLite consensus disorder prediction 1486 1517 - -
Vifa1g06075 1894 Pfam TATA box-binding protein binding 15 58 IPR009067 -
Vifa1g06075 1894 SUPERFAMILY TAF(II)230 TBP-binding fragment 21 59 IPR036741 -
Vifa1g06075 1894 ProSitePatterns Bromodomain signature. 1795 1852 IPR018359 -
Vifa1g06075 1894 CDD Bromodomain 1779 1875 - -
Vifa1g06075 1894 FunFam Transcription initiation factor TFIID subunit 1 644 734 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06075 Vifa-Chr1 948556396 948574514 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06075 662 732 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 38.028 8.18e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06075 K03125 - gmx:100780733 2927.89