Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06074 ATGGGATATGATTCTGATAGCCCCTCGCGAGATGAAGATGACGAAGAAGAATACGAGGAGTCTGGCAAGGGTAATGGGTTATTTGGGTTCATGTTTGGAAATGTTGATAACTCTGGTGATCTCGATGCTGATTATCTTGATGAGGATGCAAAGGAGCATCTCTCTGCATTGGCTGACAAGCTGGGACCATCACTGACAGATATAGATTTGTCAGGAAAGTCACCACATACACCACATGGCATTGTTGAACAAGACTGTGGTGAAAAGGCTGACAATGCTGTTGATTACGAAGATATTGATGAAGAATATGATGGTCCAGAGACTGAAACGGCAAATGAAGAGGACTATTTATTGCCAAAAAAGGAATTTTTCGCTGCCGAAGCCTCTCTTGAAGCTTTGGAACGCAAAACTTCCGTCTTCGATGATGAAAATTATGATGAAGAATCTGACAAGGAACAAGACTTAGAGAGTAATGATGCTAAAGTTGATAACATCTCTTTAGCTGTAGAGCAGGAGGAGAGCTTTGTAGATGCATCTAAAGGAGGGAGTGCTCTTGAGCATGATGTACAAGTTGGGTCTCCGCAGGCTGAAGAACTGGATACTGATGTTCAAATACCTGAGGAAGGACCCGAAGCTTTAAAAAGATCTATGGCTACACCGTTGCCTGTATTGTACGTGGACGATGGAAAAGTAGTTTTACGTTTCTCTGAAATCTTTGGTATTCAGGAACCTCCTCGAAAGGGAGAAAAGAAAGAGCGTCGGCATTCCACTCCTAGAGATAGATACAAGTCTTCGGATTTATCTGATGATATTGTAGAAGAGGATGAAGAGGAGTTCCTTAAAGGCTTCTCTCAGAGTCTCACACTCAGTAAACAGGTTTGTGTAATCGATACTGATGTATCAGAAAACGATAATGTTGACTTGGAATTTCCAAAGTTTGGATTTCTTCACGGAGATGCCTCACTTACTGCCAAAGATGACCGGCAACCAAAGGACTCTTGTCTTAGTGGTGAACCAATGAAAGGGGATTTCGCAGATGAACTTTCTTGGAAAGATCATCCCCTCATGTTGGCCAACTTTTATCCTCTTGACCAGCGAGACTGGGAAGATGAAATCCTTTGGGGCAACTCTCCTGTTGCAAGTGATAATGATAATAATATCTGTGAAATTTCTGGACCTGAATTGAGAGCTTCTGGTGATGGTGAAATAGAAATTGAAAGTGGGATACAAAATCTTCAGTCAGATCCCCATAAGATACTGGAGAAGAAGGATCATAATGTATTCATTTGCTGCTCTCCTGTTTCATTGGACCCCTTTGACTCAAGGGATTCTAATGGGGCTAAAACCAATTCAATGCCCGAAAGTCCATTTCATCCCCAACTTCTGAGGCTAGAAGTAGACAGTTCTCATCTTGCAGATGAAAGAGGGGCAGATATATCTGAGAATCATAATCAAAGTGGTCAAGTAAAGCGTTTGACCAAGGTTATGTCACAAAACAGAGATCTCATGGATGACTCATGGATAAACAAGATAATGTGGGAAGAGCTTGACAGGCCTAAGGTGAAACCAAAGCTTATATTTGATCTTCAGGATAATCAGATGCACTTCGAAGTTCTGGATAGCAAGGACGGTACCCATCTTCGCCTTCATGCTGGGGCTATGATCTTAGCCCGCTCTTTGAATTCCACTAACGCGGACTCTTCTGAGCTACCGGGACTTGGAGGTCAATATGGATGGAGACACGTTGCTAATGACAAACATTATTCAAATCGGAAAACTTCTCAGCAACTGAAATCAAACTCAAAAAAGCGCTCTGCTCACGGTGTCAAAATTTTTCACTCGCAACCTGCACTGAAACTGCAGACCATGAAATTGAAGTTGAGCAATAAAGATATTGCAAATTTTCACCGGCCTAGAGCACTGTGGTATCCCCATGATAATGAGGTGGCTGTTAAAGAACAAGGAAAATTACCAACAAAAGGATCCATGAAAATTATTATGAAAAGCTTGGGTGGTAAGGGGTGTAAACTGCACGTCAATGCTGAAGAAACTATCTCTTCTGTTAAAGCAAAAGCTTCCAAAAAGCTAGATTTCAAGGCATCAGAAGCAGTGAAAATATTTTATTTGGGTGGGGAGCTTGAAGATCACATATCACTTATTGCACAAAATGTTCAGCCAAACTCCTTGTTACATCTTGTCCGTACAAAGATACATTTATGGCCTAGGGCACAAAGAGTTCCTGGTGAGGACAAGTCGTTGCGTCCTCCGGGAGCATTCAAGAAAAAATCTGATCTGTCTGTAAAAGATGGACATGTGTTTCTTATGGAGTATTGTGAAGAAAGGCCTTTACTTCTGAGCAATGTTGGAATGGGCGCAAGACTTTGCACATATTATCAAAAAAGTTCACCGGAAGACCAATCTGGGTCCTTATTACGCAACACAGATAGTAGCTTGGGGCATGTTATTTCTCTGGACCCTGCCGACAAATCTCCTTTTCTTGGTGATTTGAAACCTGGTAGCAGTCAGTCATCACTCGAGACCAATATGTATAGAGCACCCATATTTACTCATAAAGTTCCACCAAATGACTACCTGCTGGTTCGTTCTTCAAAGGGAAAGCTATCATTAAGGCGCATTGATAAAGTTAATGTTGTTGGACAGCAGGAGCCTCTCATGGAGGTGTTCTCGCCCGGAAGTAAGAATCTTCAGACTTTCATGATGAACAGGCTATTGGTACACATGTGCCGTGAGTTCCAAGCTGCAGAGAAGCAGCACTTGTCTCCATACATTCGCATTGACTACTTTCTTTCACAGTTTCCCTTCCTATCAGAAGCCTCATTTCGTAAGAGGATCAAGGAATATGCTAATTTACAGAGAGGTGCACATGGGCAATCCATTTTTGTTAAAAAGCGTAATTTCCGCATGTGGTCGGAGGATGAATTGAGAAAAATGGTGACACCAGAGCTTGTCTGTGCTTTTGAAAGCATGCAAGCTGGCCTCTACCGCTTAAAACATTTAGGAATTACTGAAACACATCCTAATAATATTTCGTCTGCAATGAGTCGGCTTCCTGATGAAGCAATAGCACTGGCTGCTGCATCACACATTGAGAGGGAACTGCAAATTACTCCATGGAACTTGAGTAGCAATTTTGTTGCCTGTACAACTCAGGGTAAGGAAAATATTGAACGGATGGAAATTACTGGCGTTGGTGATCCATCAGGCCGCGGCTTGGGTTTTAGCTATGCTAGGGCACCTCCAAAGGCACCAGTGTCTAGTGCAGTGGTGAAGAAAAAAGCAGCTGCTGGCAGGGGAGGTTCCACTGTTACTGGTACGGATGCTGATTTACGTAGATTAAGCATGGAGGCTGCACGAGAGGTACTTCTTAAATTCAATGTTCCTGAGGAAGTCATTGCAAAGCAAACCAGATGGCATCGCATTGCTATGATACGTAAACTATCAAGTGAGCAAGCTGCGTCTGGGGTTAAGGTTGATCCAACAACTATAGGAAAATATGCCCGTGGTCAGCGAATGTCCTTTCTTCAGTTACAGCAGCAGACCAGAGAGAAGTGCCAAGAGATTTGGGATAGGCAAGTTCAGAGTTTGGCAGCTTTAAATGGTGATGATAATGAGAGTGATTCAGAAGGAAATAGTGATCTAGATTCTTTTGCTGGAGATCTGGAAAATTTGCTTGATGCTGAGGAATTTGAAGAGGGAGAAGAAGGTACTAATGACTTAAAACGTGATAAGGGAGACGGTGTTAAGGGTCTTAAAATGAGAAGGCGCACAACTTTGGCTCAGGCAGAGGAGGAAATAGAAGATGAAGCAGCCGAGGCCACTGAATTATGCAGGCTGCTTATGGATGATGACGGAGCTTGCCGGAAGAAAAAGAAGAACACTGGGGTTATGGTGGATGCAAGAAGATTGATACCGAAACTACAACCAAAATTTGTCTTTGACAGCACTGAACAAGTAAAGCAAATAACAAATGCAACATTGCAACTCGATGGAACTAATCATTTTAAGGAGGATGCAATTACAGATCTTAGGGAGGATGATAAATTTTCTTCTAAGAAAAGCAAATCAGTTAAGGTCAATAAAGCAAAGAAGAGTGACATTTCACCTATTAGTCTATCAAATAAAAAAATCAAACTAAATATGGGAGAAGGAATCAAGGTATTTAAGGAGAAAAAACCATCAAGGGAAACTTTCGTTTGTGGAGCATGTGGCCAGCTTGGGCACATGCGAACGAACAAGAATTGTCCGAAATATGGTGAAGATCTAGAAGCACAACTTGAACCTATGGACATGGAAAAATTAACTGGAAGATCCAGCTTTGTTGATTCTTCTAGCCAGTCTCAGCATAAACTCTCCTCCAAAAAGTCAATATCAAAGATTGTAACAAAAATGGCTCCAGTTGAGAATTCAACAAAAATTCCGTTGAAGTTCAAATGCAGTTCAACAGAGAAATCTTCTGATAGACCTGCAATAGAAACCCTGCAGAGTTCTGACAAGCCAGTCACTTCTGACTCAGAAACTGCTAAGTCTGCTAAGATTAGTAAGATAATTATTCCAAACAAAGTGAAATCAGAAGATACACAGGCTGAATCTCTTAAGCATGCTATTGTTATACGCCCTCCTACTGATCCAGGTAGAGGTCAGGTTGATTCTCATAAGTTCCCAATTAAAATCCGTCCGCCTGCAGAAATAGATAGGGAGCAAAGTCACAAAAAGATTGTTATAAAGCGTACAAAGGATGTTGCTGATCTGGAACTTGACAGTCCTGGTGGAAACACACGACTTGAAAACAGAAAAACTAAAAGAATTGTGGAATTGGCGAATTTTGAGAAGCACAGAAAGCAGGACACCATGTATTCAACTGAAAGTATGGTAAAATGGAATCCTAAAGAGGATAGAAGATGGTGGGAAGAACAAGAGAAACGAAGAAATGAAGTGAGACTTAGAGAAAAGAATGCAAAGAGGTATGGCACAGAAGAAAGGAAGATGCGCAAGGAACGAGAAAGGTTAGATGAGTTAAAAAGATATGAACAAGAAAGGTTAGATGAGTTAAAAAGATATGAAGAAGATATTAGAAGAGAGAGGGAAGAGGAAGAACGACAAAAAGCTAAGAAGAAAAAGAAAAAGAGAAAGCCCGATTTAAGAGATGAGTATTTAGACGATCCCAGGGAAAGAAGATATGGTAAGAGGATGCTAGAAAGAGAACGAAGTGGAAAACGGAGATCAGTTGTTGAGACAGGAAAGATTAGTGGAGATTTTCTGCCGCCAACTAAACGCCGAAGAGGGGGAGGAGGAGAGGTTGGTTTGGCAAATATCTTGGAGAGTATTGTGGATGCCATTGTGAAAGACAGGCACGATCTGTCTTATCTCTTTGTGAAACCAGTGCCCAAGAAAGAGGCCCCTGACTACCTGGATATCATAGAGACACCTATGGATCTTTCAAAAATCAGGCAACGGGTACGTAATATGGAGTACAAAAGTCGCGAAGACTTCAGACATGATGTATGGCAAATTACTTTTAATGCCCATAAATATAATGATGGACGAAATCCTGGAATCCCTCCAGTTGCGGATATGCTTTTGGAATATTGTGATTATTTGTTGAATGAGAATGATGATAATCTTACTGCCGCTGAAGCTGGCATTGAAATTAAAGATTTCTAA 5682 0.4145 MGYDSDSPSRDEDDEEEYEESGKGNGLFGFMFGNVDNSGDLDADYLDEDAKEHLSALADKLGPSLTDIDLSGKSPHTPHGIVEQDCGEKADNAVDYEDIDEEYDGPETETANEEDYLLPKKEFFAAEASLEALERKTSVFDDENYDEESDKEQDLESNDAKVDNISLAVEQEESFVDASKGGSALEHDVQVGSPQAEELDTDVQIPEEGPEALKRSMATPLPVLYVDDGKVVLRFSEIFGIQEPPRKGEKKERRHSTPRDRYKSSDLSDDIVEEDEEEFLKGFSQSLTLSKQVCVIDTDVSENDNVDLEFPKFGFLHGDASLTAKDDRQPKDSCLSGEPMKGDFADELSWKDHPLMLANFYPLDQRDWEDEILWGNSPVASDNDNNICEISGPELRASGDGEIEIESGIQNLQSDPHKILEKKDHNVFICCSPVSLDPFDSRDSNGAKTNSMPESPFHPQLLRLEVDSSHLADERGADISENHNQSGQVKRLTKVMSQNRDLMDDSWINKIMWEELDRPKVKPKLIFDLQDNQMHFEVLDSKDGTHLRLHAGAMILARSLNSTNADSSELPGLGGQYGWRHVANDKHYSNRKTSQQLKSNSKKRSAHGVKIFHSQPALKLQTMKLKLSNKDIANFHRPRALWYPHDNEVAVKEQGKLPTKGSMKIIMKSLGGKGCKLHVNAEETISSVKAKASKKLDFKASEAVKIFYLGGELEDHISLIAQNVQPNSLLHLVRTKIHLWPRAQRVPGEDKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNVGMGARLCTYYQKSSPEDQSGSLLRNTDSSLGHVISLDPADKSPFLGDLKPGSSQSSLETNMYRAPIFTHKVPPNDYLLVRSSKGKLSLRRIDKVNVVGQQEPLMEVFSPGSKNLQTFMMNRLLVHMCREFQAAEKQHLSPYIRIDYFLSQFPFLSEASFRKRIKEYANLQRGAHGQSIFVKKRNFRMWSEDELRKMVTPELVCAFESMQAGLYRLKHLGITETHPNNISSAMSRLPDEAIALAAASHIERELQITPWNLSSNFVACTTQGKENIERMEITGVGDPSGRGLGFSYARAPPKAPVSSAVVKKKAAAGRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEVIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTIGKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLAALNGDDNESDSEGNSDLDSFAGDLENLLDAEEFEEGEEGTNDLKRDKGDGVKGLKMRRRTTLAQAEEEIEDEAAEATELCRLLMDDDGACRKKKKNTGVMVDARRLIPKLQPKFVFDSTEQVKQITNATLQLDGTNHFKEDAITDLREDDKFSSKKSKSVKVNKAKKSDISPISLSNKKIKLNMGEGIKVFKEKKPSRETFVCGACGQLGHMRTNKNCPKYGEDLEAQLEPMDMEKLTGRSSFVDSSSQSQHKLSSKKSISKIVTKMAPVENSTKIPLKFKCSSTEKSSDRPAIETLQSSDKPVTSDSETAKSAKISKIIIPNKVKSEDTQAESLKHAIVIRPPTDPGRGQVDSHKFPIKIRPPAEIDREQSHKKIVIKRTKDVADLELDSPGGNTRLENRKTKRIVELANFEKHRKQDTMYSTESMVKWNPKEDRRWWEEQEKRRNEVRLREKNAKRYGTEERKMRKERERLDELKRYEQERLDELKRYEEDIRREREEEERQKAKKKKKKRKPDLRDEYLDDPRERRYGKRMLERERSGKRRSVVETGKISGDFLPPTKRRRGGGGEVGLANILESIVDAIVKDRHDLSYLFVKPVPKKEAPDYLDIIETPMDLSKIRQRVRNMEYKSREDFRHDVWQITFNAHKYNDGRNPGIPPVADMLLEYCDYLLNENDDNLTAAEAGIEIKDF 1893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06074 1893 SMART bromo_6 1768 1879 IPR001487 GO:0005515
Vifa1g06074 1893 Coils Coil 1258 1289 - -
Vifa1g06074 1893 Gene3D - 19 65 IPR036741 -
Vifa1g06074 1893 MobiDBLite consensus disorder prediction 1698 1734 - -
Vifa1g06074 1893 ProSiteProfiles Bromodomain profile. 1789 1859 IPR001487 GO:0005515
Vifa1g06074 1893 MobiDBLite consensus disorder prediction 1485 1516 - -
Vifa1g06074 1893 MobiDBLite consensus disorder prediction 1 29 - -
Vifa1g06074 1893 Gene3D - 645 735 - -
Vifa1g06074 1893 Gene3D - 1690 1892 IPR036427 GO:0005515
Vifa1g06074 1893 SUPERFAMILY Bromodomain 1761 1880 IPR036427 GO:0005515
Vifa1g06074 1893 Pfam Zinc knuckle 1406 1429 IPR041670 -
Vifa1g06074 1893 FunFam Transcription initiation factor TFIID subunit 1 645 735 - -
Vifa1g06074 1893 MobiDBLite consensus disorder prediction 68 89 - -
Vifa1g06074 1893 MobiDBLite consensus disorder prediction 173 203 - -
Vifa1g06074 1893 CDD Bromodomain 1778 1874 - -
Vifa1g06074 1893 MobiDBLite consensus disorder prediction 1718 1734 - -
Vifa1g06074 1893 Pfam Bromodomain 1789 1855 IPR001487 GO:0005515
Vifa1g06074 1893 ProSitePatterns Bromodomain signature. 1794 1851 IPR018359 -
Vifa1g06074 1893 Pfam Ubiquitin family 667 735 IPR000626 GO:0005515
Vifa1g06074 1893 SUPERFAMILY Ubiquitin-like 633 733 IPR029071 -
Vifa1g06074 1893 ProSiteProfiles Ubiquitin domain profile. 663 733 IPR000626 GO:0005515
Vifa1g06074 1893 MobiDBLite consensus disorder prediction 135 160 - -
Vifa1g06074 1893 Pfam Protein of unknown function (DUF3591) 582 1149 IPR022591 -
Vifa1g06074 1893 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 10 1889 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Vifa1g06074 1893 PRINTS Bromodomain signature 1840 1859 IPR001487 GO:0005515
Vifa1g06074 1893 PRINTS Bromodomain signature 1792 1805 IPR001487 GO:0005515
Vifa1g06074 1893 PRINTS Bromodomain signature 1806 1822 IPR001487 GO:0005515
Vifa1g06074 1893 PRINTS Bromodomain signature 1822 1840 IPR001487 GO:0005515
Vifa1g06074 1893 Pfam TATA box-binding protein binding 15 58 IPR009067 -
Vifa1g06074 1893 SUPERFAMILY TAF(II)230 TBP-binding fragment 21 59 IPR036741 -
Vifa1g06074 1893 MobiDBLite consensus disorder prediction 244 268 - -
Vifa1g06074 1893 Coils Coil 1662 1717 - -
Vifa1g06074 1893 MobiDBLite consensus disorder prediction 589 608 - -
Vifa1g06074 1893 CDD UDM1_RNF168_RNF169-like 1634 1689 - -
Vifa1g06074 1893 SMART ubq_7 663 735 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06074 Vifa-Chr1 948556396 948574514 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06074 663 733 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 38.028 8.18e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06074 K03125 - gmx:100780733 2922.11