Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06073 ATGGGATATGATTCTGATAGCCCCTCGCGAGATGAAGATGACGAAGAAGAATACGAGGAGTCTGGCAAGGGTAATGGGTTATTTGGGTTCATGTTTGGAAATGTTGATAACTCTGGTGATCTCGATGCTGATTATCTTGATGAGGATGCAAAGGAGCATCTCTCTGCATTGGCTGACAAGCTGGGACCATCACTGACAGATATAGATTTGTCAGGAAAGTCACCACATACACCACATGGCATTGTTGAACAAGACTGTGGTGAAAAGGCTGACAATGCTGTTGATTACGAAGATATTGATGAAGAATATGATGGTCCAGAGACTGAAACGGCAAATGAAGAGGACTATTTATTGCCAAAAAAGGAATTTTTCGCTGCCGAAGCCTCTCTTGAAGCTTTGGAACGCAAAACTTCCGTCTTCGATGATGAAAATTATGATGAAGAATCTGACAAGGAACAAGACTTAGAGAGTAATGATGCTAAAGTTGATAACATCTCTTTAGCTGTAGAGCAGGAGGAGAGCTTTGTAGATGCATCTAAAGGAGGGAGTGCTCTTGAGCATGATGTACAAGTTGGGTCTCCGCAGGCTGAAGAACTGGATACTGATGTTCAAATACCTGAGGAAGGACCCGAAGCTTTAAAAAGATCTATGGCTACACCGTTGCCTGTATTGTACGTGGACGATGGAAAAGTAGTTTTACGTTTCTCTGAAATCTTTGGTATTCAGGAACCTCCTCGAAAGGGAGAAAAGAAAGAGCGTCGGCATTCCACTCCTAGAGATAGATACAAGTCTTCGGATTTATCTGATGATATTGTAGAAGAGGATGAAGAGGAGTTCCTTAAAGGCTTCTCTCAGAGTCTCACACTCAGTAAACAGGTTTGTGTAATCGATACTGATGTATCAGAAAACGATAATGTTGACTTGGAATTTCCAAAGTTTGGATTTCTTCACGGAGATGCCTCACTTACTGCCAAAGATGACCGGCAACCAAAGGACTCTTGTCTTAGTGGTGAACCAATGAAAGGGGATTTCGCAGATGAACTTTCTTGGAAAGATCATCCCCTCATGTTGGCCAACTTTTATCCTCTTGACCAGCGAGACTGGGAAGATGAAATCCTTTGGGGCAACTCTCCTGTTGCAAGTGATAATGATAATAATATCTGTGAAATTTCTGGACCTGAATTGAGAGCTTCTGGTGATGGTGAAATAGAAATTGAAAGTGGGATACAAAATCTTCAGTCAGATCCCCATAAGATACTGGAGAAGAAGGATCATAATGTATTCATTTGCTGCTCTCCTGTTTCATTGGACCCCTTTGACTCAAGGGATTCTAATGGGGCTAAAACCAATTCAATGCCCGAAAGTCCATTTCATCCCCAACTTCTGAGGCTAGAAGTAGACAGTTCTCATCTTGCAGATGAAAGAGGGGCAGATATATCTGAGAATCATAATCAAAGTGGTCAAGTAAAGCGTTTGACCAAGGTTATGTCACAAAACAGAGATCTCATGGATGACTCATGGATAAACAAGATAATGTGGGAAGAGCTTGACAGGCCTAAGGTGAAACCAAAGCTTATATTTGATCTTCAGGATAATCAGATGCACTTCGAAGTTCTGGATAGCAAGGACGGTACCCATCTTCGCCTTCATGCTGGGGCTATGATCTTAGCCCGCTCTTTGAATTCCACTAACGCGGACTCTTCTGAGCTACCGGGACTTGGAGGTCAATATGGATGGAGACACGTTGCTAATGACAAACATTATTCAAATCGGAAAACTTCTCAGCAACTGAAATCAAACTCAAAAAAGCGCTCTGCTCACGGTGTCAAAATTTTTCACTCGCAACCTGCACTGAAACTGCAGACCATGAAATTGAAGTTGAGCAATAAAGATATTGCAAATTTTCACCGGCCTAGAGCACTGTGGTATCCCCATGATAATGAGGTGGCTGTTAAAGAACAAGGAAAATTACCAACAAAAGGATCCATGAAAATTATTATGAAAAGCTTGGGTGGTAAGGGGTGTAAACTGCACGTCAATGCTGAAGAAACTATCTCTTCTGTTAAAGCAAAAGCTTCCAAAAAGCTAGATTTCAAGGCATCAGAAGCAGTGAAAATATTTTATTTGGGTGGGGAGCTTGAAGATCACATATCACTTATTGCACAAAATGTTCAGCCAAACTCCTTGTTACATCTTGTCCGTACAAAGATACATTTATGGCCTAGGGCACAAAGAGTTCCTGGTGAGGACAAGTCGTTGCGTCCTCCGGGAGCATTCAAGAAAAAATCTGATCTGTCTGTAAAAGATGGACATGTGTTTCTTATGGAGTATTGTGAAGAAAGGCCTTTACTTCTGAGCAATGTTGGAATGGGCGCAAGACTTTGCACATATTATCAAAAAAGTTCACCGGAAGACCAATCTGGGTCCTTATTACGCAACACAGATAGTAGCTTGGGGCATGTTATTTCTCTGGACCCTGCCGACAAATCTCCTTTTCTTGGTGATTTGAAACCTGGTAGCAGTCAGTCATCACTCGAGACCAATATGTATAGAGCACCCATATTTACTCATAAAGTTCCACCAAATGACTACCTGCTGGTTCGTTCTTCAAAGGGAAAGCTATCATTAAGGCGCATTGATAAAGTTAATGTTGTTGGACAGCAGGAGCCTCTCATGGAGGTGTTCTCGCCCGGAAGTAAGAATCTTCAGACTTTCATGATGAACAGGCTATTGGTACACATGTGCCGTGAGTTCCAAGCTGCAGAGAAGCAGCACTTGTCTCCATACATTCGCATTGACTACTTTCTTTCACAGTTTCCCTTCCTATCAGAAGCCTCATTTCGTAAGAGGATCAAGGAATATGCTAATTTACAGAGAGGTGCACATGGGCAATCCATTTTTGTTAAAAAGCGTAATTTCCGCATGTGGTCGGAGGATGAATTGAGAAAAATGGTGACACCAGAGCTTGTCTGTGCTTTTGAAAGCATGCAAGCTGGCCTCTACCGCTTAAAACATTTAGGAATTACTGAAACACATCCTAATAATATTTCGTCTGCAATGAGTCGGCTTCCTGATGAAGCAATAGCACTGGCTGCTGCATCACACATTGAGAGGGAACTGCAAATTACTCCATGGAACTTGAGTAGCAATTTTGTTGCCTGTACAACTCAGGGTAAGGAAAATATTGAACGGATGGAAATTACTGGCGTTGGTGATCCATCAGGCCGCGGCTTGGGTTTTAGCTATGCTAGGGCACCTCCAAAGGCACCAGTGTCTAGTGCAGTGGTGAAGAAAAAAGCAGCTGCTGGCAGGGGAGGTTCCACTGTTACTGGTACGGATGCTGATTTACGTAGATTAAGCATGGAGGCTGCACGAGAGGTACTTCTTAAATTCAATGTTCCTGAGGAAGTCATTGCAAAGCAAACCAGATGGCATCGCATTGCTATGATACGTAAACTATCAAGTGAGCAAGCTGCGTCTGGGGTTAAGGTTGATCCAACAACTATAGGAAAATATGCCCGTGGTCAGCGAATGTCCTTTCTTCAGTTACAGCAGCAGACCAGAGAGAAGTGCCAAGAGATTTGGGATAGGCAAGTTCAGAGTTTGGCAGCTTTAAATGGTGATGATAATGAGAGTGATTCAGAAGGAAATAGTGATCTAGATTCTTTTGCTGGAGATCTGGAAAATTTGCTTGATGCTGAGGAATTTGAAGAGGGAGAAGAAGGTACTAATGACTTAAAACGTGATAAGGGAGACGGTGTTAAGGGTCTTAAAATGAGAAGGCGCACAACTTTGGCTCAGGCAGAGGAGGAAATAGAAGATGAAGCAGCCGAGGCCACTGAATTATGCAGGCTGCTTATGGATGATGACGGAGCTTGCCGGAAGAAAAAGAAGAACACTGGGGTTATGGTGGATGCAAGAAGATTGATACCGAAACTACAACCAAAATTTGTCTTTGACAGCACTGAACAAGTAAAGCAAATAACAAATGCAACATTGCAACTCGATGGAACTAATCATTTTAAGGAGGATGCAATTACAGATCTTAGGGAGGATGATAAATTTTCTTCTAAGAAAAGCAAATCAGTTAAGGTCAATAAAGCAAAGAAGAGTGACATTTCACCTATTAGTCTATCAAATAAAAAAATCAAACTAAATATGGGAGAAGGAATCAAGAACCAGGTATTTAAGGAGAAAAAACCATCAAGGGAAACTTTCGTTTGTGGAGCATGTGGCCAGCTTGGGCACATGCGAACGAACAAGAATTGTCCGAAATATGGTGAAGATCTAGAAGCACAACTTGAACCTATGGACATGGAAAAATTAACTGGAAGATCCAGCTTTGTTGATTCTTCTAGCCAGTCTCAGCATAAACTCTCCTCCAAAAAGTCAATATCAAAGATTGTAACAAAAATGGCTCCAGTTGAGAATTCAACAAAAATTCCGTTGAAGTTCAAATGCAGTTCAACAGAGAAATCTTCTGATAGACCTGCAATAGAAACCCTGCAGAGTTCTGACAAGCCAGTCACTTCTGACTCAGAAACTGCTAAGTCTGCTAAGATTAGTAAGATAATTATTCCAAACAAAGTGAAATCAGAAGATACACAGGCTGAATCTCTTAAGCATGCTATTGTTATACGCCCTCCTACTGATCCAGGTAGAGGTCAGGTTGATTCTCATAAGTTCCCAATTAAAATCCGTCCGCCTGCAGAAATAGATAGGGAGCAAAGTCACAAAAAGATTGTTATAAAGCGTACAAAGGATGTTGCTGATCTGGAACTTGACAGTCCTGGTGGAAACACACGACTTGAAAACAGAAAAACTAAAAGAATTGTGGAATTGGCGAATTTTGAGAAGCACAGAAAGCAGGACACCATGTATTCAACTGAAAGTATGGTAAAATGGAATCCTAAAGAGGATAGAAGATGGTGGGAAGAACAAGAGAAACGAAGAAATGAAGTGAGACTTAGAGAAAAGAATGCAAAGAGGTATGGCACAGAAGAAAGGAAGATGCGCAAGGAACGAGAAAGGTTAGATGAGTTAAAAAGATATGAACAAGAAAGGTTAGATGAGTTAAAAAGATATGAAGAAGATATTAGAAGAGAGAGGGAAGAGGAAGAACGACAAAAAGCTAAGAAGAAAAAGAAAAAGAGAAAGCCCGATTTAAGAGATGAGTATTTAGACGATCCCAGGGAAAGAAGATATGGTAAGAGGATGCTAGAAAGAGAACGAAGTGGAAAACGGAGATCAGTTGTTGAGACAGGAAAGATTAGTGGAGATTTTCTGCCGCCAACTAAACGCCGAAGAGGGGGAGGAGGAGAGGTTGGTTTGGCAAATATCTTGGAGAGTATTGTGGATGCCATTGTGAAAGACAGGCACGATCTGTCTTATCTCTTTGTGAAACCAGTGCCCAAGAAAGAGGCCCCTGACTACCTGGATATCATAGAGACACCTATGGATCTTTCAAAAATCAGGCAACGGGTACGTAATATGGAGTACAAAAGTCGCGAAGACTTCAGACATGATGTATGGCAAATTACTTTTAATGCCCATAAATATAATGATGGACGAAATCCTGGAATCCCTCCAGTTGCGGATATGCTTTTGGAATATTGTGATTATTTGTTGAATGAGAATGATGATAATCTTACTGCCGCTGAAGCTGGCATTGAAATTAAAGATTTCTAA 5688 0.4146 MGYDSDSPSRDEDDEEEYEESGKGNGLFGFMFGNVDNSGDLDADYLDEDAKEHLSALADKLGPSLTDIDLSGKSPHTPHGIVEQDCGEKADNAVDYEDIDEEYDGPETETANEEDYLLPKKEFFAAEASLEALERKTSVFDDENYDEESDKEQDLESNDAKVDNISLAVEQEESFVDASKGGSALEHDVQVGSPQAEELDTDVQIPEEGPEALKRSMATPLPVLYVDDGKVVLRFSEIFGIQEPPRKGEKKERRHSTPRDRYKSSDLSDDIVEEDEEEFLKGFSQSLTLSKQVCVIDTDVSENDNVDLEFPKFGFLHGDASLTAKDDRQPKDSCLSGEPMKGDFADELSWKDHPLMLANFYPLDQRDWEDEILWGNSPVASDNDNNICEISGPELRASGDGEIEIESGIQNLQSDPHKILEKKDHNVFICCSPVSLDPFDSRDSNGAKTNSMPESPFHPQLLRLEVDSSHLADERGADISENHNQSGQVKRLTKVMSQNRDLMDDSWINKIMWEELDRPKVKPKLIFDLQDNQMHFEVLDSKDGTHLRLHAGAMILARSLNSTNADSSELPGLGGQYGWRHVANDKHYSNRKTSQQLKSNSKKRSAHGVKIFHSQPALKLQTMKLKLSNKDIANFHRPRALWYPHDNEVAVKEQGKLPTKGSMKIIMKSLGGKGCKLHVNAEETISSVKAKASKKLDFKASEAVKIFYLGGELEDHISLIAQNVQPNSLLHLVRTKIHLWPRAQRVPGEDKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNVGMGARLCTYYQKSSPEDQSGSLLRNTDSSLGHVISLDPADKSPFLGDLKPGSSQSSLETNMYRAPIFTHKVPPNDYLLVRSSKGKLSLRRIDKVNVVGQQEPLMEVFSPGSKNLQTFMMNRLLVHMCREFQAAEKQHLSPYIRIDYFLSQFPFLSEASFRKRIKEYANLQRGAHGQSIFVKKRNFRMWSEDELRKMVTPELVCAFESMQAGLYRLKHLGITETHPNNISSAMSRLPDEAIALAAASHIERELQITPWNLSSNFVACTTQGKENIERMEITGVGDPSGRGLGFSYARAPPKAPVSSAVVKKKAAAGRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEVIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTIGKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLAALNGDDNESDSEGNSDLDSFAGDLENLLDAEEFEEGEEGTNDLKRDKGDGVKGLKMRRRTTLAQAEEEIEDEAAEATELCRLLMDDDGACRKKKKNTGVMVDARRLIPKLQPKFVFDSTEQVKQITNATLQLDGTNHFKEDAITDLREDDKFSSKKSKSVKVNKAKKSDISPISLSNKKIKLNMGEGIKNQVFKEKKPSRETFVCGACGQLGHMRTNKNCPKYGEDLEAQLEPMDMEKLTGRSSFVDSSSQSQHKLSSKKSISKIVTKMAPVENSTKIPLKFKCSSTEKSSDRPAIETLQSSDKPVTSDSETAKSAKISKIIIPNKVKSEDTQAESLKHAIVIRPPTDPGRGQVDSHKFPIKIRPPAEIDREQSHKKIVIKRTKDVADLELDSPGGNTRLENRKTKRIVELANFEKHRKQDTMYSTESMVKWNPKEDRRWWEEQEKRRNEVRLREKNAKRYGTEERKMRKERERLDELKRYEQERLDELKRYEEDIRREREEEERQKAKKKKKKRKPDLRDEYLDDPRERRYGKRMLERERSGKRRSVVETGKISGDFLPPTKRRRGGGGEVGLANILESIVDAIVKDRHDLSYLFVKPVPKKEAPDYLDIIETPMDLSKIRQRVRNMEYKSREDFRHDVWQITFNAHKYNDGRNPGIPPVADMLLEYCDYLLNENDDNLTAAEAGIEIKDF 1895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06073 1895 ProSitePatterns Bromodomain signature. 1796 1853 IPR018359 -
Vifa1g06073 1895 Coils Coil 1258 1289 - -
Vifa1g06073 1895 Gene3D - 1692 1894 IPR036427 GO:0005515
Vifa1g06073 1895 MobiDBLite consensus disorder prediction 1 29 - -
Vifa1g06073 1895 Gene3D - 645 735 - -
Vifa1g06073 1895 SMART bromo_6 1770 1881 IPR001487 GO:0005515
Vifa1g06073 1895 CDD UDM1_RNF168_RNF169-like 1636 1691 - -
Vifa1g06073 1895 CDD Bromodomain 1780 1876 - -
Vifa1g06073 1895 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 10 1891 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Vifa1g06073 1895 SUPERFAMILY Bromodomain 1763 1882 IPR036427 GO:0005515
Vifa1g06073 1895 FunFam Transcription initiation factor TFIID subunit 1 645 735 - -
Vifa1g06073 1895 MobiDBLite consensus disorder prediction 1700 1736 - -
Vifa1g06073 1895 MobiDBLite consensus disorder prediction 1487 1518 - -
Vifa1g06073 1895 Pfam Bromodomain 1791 1857 IPR001487 GO:0005515
Vifa1g06073 1895 MobiDBLite consensus disorder prediction 68 89 - -
Vifa1g06073 1895 ProSiteProfiles Bromodomain profile. 1791 1861 IPR001487 GO:0005515
Vifa1g06073 1895 MobiDBLite consensus disorder prediction 173 203 - -
Vifa1g06073 1895 Pfam Zinc knuckle 1408 1431 IPR041670 -
Vifa1g06073 1895 Gene3D - 19 65 IPR036741 -
Vifa1g06073 1895 Pfam Ubiquitin family 667 735 IPR000626 GO:0005515
Vifa1g06073 1895 SUPERFAMILY Ubiquitin-like 633 733 IPR029071 -
Vifa1g06073 1895 ProSiteProfiles Ubiquitin domain profile. 663 733 IPR000626 GO:0005515
Vifa1g06073 1895 MobiDBLite consensus disorder prediction 135 160 - -
Vifa1g06073 1895 Pfam Protein of unknown function (DUF3591) 582 1149 IPR022591 -
Vifa1g06073 1895 Coils Coil 1664 1719 - -
Vifa1g06073 1895 MobiDBLite consensus disorder prediction 1720 1736 - -
Vifa1g06073 1895 Pfam TATA box-binding protein binding 15 58 IPR009067 -
Vifa1g06073 1895 SUPERFAMILY TAF(II)230 TBP-binding fragment 21 59 IPR036741 -
Vifa1g06073 1895 MobiDBLite consensus disorder prediction 244 268 - -
Vifa1g06073 1895 PRINTS Bromodomain signature 1842 1861 IPR001487 GO:0005515
Vifa1g06073 1895 PRINTS Bromodomain signature 1824 1842 IPR001487 GO:0005515
Vifa1g06073 1895 PRINTS Bromodomain signature 1808 1824 IPR001487 GO:0005515
Vifa1g06073 1895 PRINTS Bromodomain signature 1794 1807 IPR001487 GO:0005515
Vifa1g06073 1895 MobiDBLite consensus disorder prediction 589 608 - -
Vifa1g06073 1895 SMART ubq_7 663 735 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06073 Vifa-Chr1 948556396 948574514 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06073 663 733 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 38.028 8.11e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06073 K03125 - gmx:100780733 2931.35