Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06071 ATGGATCTTGAGTCTGTTATCCACAAGAACCCAATTAAGGAGGAATCATGGAAGCATGTGTTGGTTTTGGCTTATCAAAGTTTAGGAGTTGTGTATGGAGATTTAAGCACTTCTCCACTTTATGTTTACAAAAGTGCTTTTGCTGAGGATATTAAACATTCGGACACAAACGAAGAAATCTTTGGTGTATTGTCTTTTGTGTTTTGGACACTGACTTTGATTCCACTTTTCAAGTATGTGTTCATTGTGTTGAGAGCTGATGATAATGGTGAAGGAGGGACTTTTGCTTTGTACTCTTTGCTATGTAGACATGCTCGTGTGAGTTTGATGCCTAATACTCAGCTTGCCGACGAGGATTTGACACAGTACACAATGGATGGAACTGCTGCAGTCAATAAGAGAAATGTTGGGTCTAGTTTGAAATCTTTGTTGGAGAAACATAGGGTGCTTCAAAGGGTGCTTCTTGTTCTTGCTTTGATTGGGACATGCATGGTTATTGGCGATGGTGTTCTCACACCAGCAATTTCTGTTTTTTCTGCTATTTCAGGTTTAGAGCTTTCCATGTCTAAAGAGCAGCACAAATATGTGGAGGTTCCGGTTGCTTGTATAATACTGATGTTTTTATTTGCGCTTCAACATTACGGAACTCATCGGATTGGATCTCTTTTCGCACCTGTTGTGTTGACGTGGCTGATATGCATCAGTTCTATTGGTATTTATAATATAATCCACTGGAATCCGCATGTTTACCAAGCTCTCTCCCCATACTACATGTTCAAATTTCTGAAAAAGACTCAATCGGGAGGTTGGATGTCGTTGGGAGGGATTCTATTGTGTATAACTGGCTCAGAAGCTATGTTTGCTGATTTAGGACACTTTTCGCAATTGTCTATTCAGATTGCTTTCACTTTCTTAGTTTACCCTTCTTTGATCTTAGCCTATATGGGACAAGCTGCATATCTTTCCAAGCATCATTCCCTTGAAACTGACTATAGAATCGGGTTTTATGTGTCTGTACCAGTAAAACTTAGATGGCCTGTTCTTGCAATAGCCATACTTCAAGCTGTGGTTGGAAGCCAAGCTATCATCACCGGAACTTTCTCGATAATCAAACAGTGTTCCTCTTTAGGATGCTTCCCGAAAGTCAAAATCGTCCATACATCATCCAAGATACATGGTCAGATTTACATTCCTGAGATCAACTGGAGTTTGATGCTTCTTTGCCTGGCTGTTACAATTGGTTTTCGAGATACCAAACGCCTTGGAAACGCAGCAGGTTTGGCTGTGATAACTGTCATGCTGGTAACGACATGCCTGATGTCTCTGGTTATAGTCTTATGTTGGCACAAAAGTGCTTGGGTAGCTATTTGCTTTCTATTGTTCTTTGGTTCCATTGAAGCACTCTATTTCTCTGCCTCACTCATCAAGTTCCTTGAAGGTGCTTGGGTCCCTATTGCCCTTTCACTCATCTTTCTTATTATCATGTATGTATGGCACTATGGCACGGTTATGAAATATGAATTCGATGTTCAAAATAAGGTCGCTATCAATTGGCTCCTTGGTTTAGGCCCGACTCTCGGAATCGTAAGGGTTAAAGGTATTGGCCTAATACACACCGAGCTTGTAGCTGGGATCCCAGCTATCTTCTCTCATTTTGTTACCAATCTTCCTGCTTTTCACCAAGTTGTAATCTTTCTATGCATCAAATCCGTCCCGGTACCGCATGTTGCACCTCGAGAGAGATTCTTAGTTGGTAGAATTGGACCAAAGGAATATAGGCTTTATAGGTGCATAGCACGGTATGGCTACCGCGACGTTCATAAAGATGACATGGAGTTTGAAAATGATCTTATTTGCAGCATAGCAGAGTTTATCCGATCCGATATATCTGAATACAGCTCAGGGTTAGGAAGTTTCGAAGATGATACAAAGATGACCGTTGTCGGGACTTCGTCGTCAAACTCAGAAGGCGTAAAGATTTCGGAAGACAATCAAGATAATAATTCTCAAATAGAAGGAACTTCGTCGGAGTTGAAGGAAGTTAAGTCGCCGAAGAAAGTGAAGAAGAGAGTGAGGTTCGTTGTGCCGGATAGTCCACGGATGGACATGGATACAAGGGCAGAATTGGTTGAACTTATGGAAGCAAAGGAAGCAGGAATGGCATTCATAATGAGTCATTCATATGTGAGAGCAAAAAGAGGATCAAGTTGGATAAAAAAAGTTGTTATAAATTATGGTTATGATTTCTTAAGGAGAAACTCTAGAGGACCAGCTTATGCTTTAAGTTTACCTCATGCATCTACCTTAGAGGTAGGAATGATCTATCATGTATGA 2334 0.4079 MDLESVIHKNPIKEESWKHVLVLAYQSLGVVYGDLSTSPLYVYKSAFAEDIKHSDTNEEIFGVLSFVFWTLTLIPLFKYVFIVLRADDNGEGGTFALYSLLCRHARVSLMPNTQLADEDLTQYTMDGTAAVNKRNVGSSLKSLLEKHRVLQRVLLVLALIGTCMVIGDGVLTPAISVFSAISGLELSMSKEQHKYVEVPVACIILMFLFALQHYGTHRIGSLFAPVVLTWLICISSIGIYNIIHWNPHVYQALSPYYMFKFLKKTQSGGWMSLGGILLCITGSEAMFADLGHFSQLSIQIAFTFLVYPSLILAYMGQAAYLSKHHSLETDYRIGFYVSVPVKLRWPVLAIAILQAVVGSQAIITGTFSIIKQCSSLGCFPKVKIVHTSSKIHGQIYIPEINWSLMLLCLAVTIGFRDTKRLGNAAGLAVITVMLVTTCLMSLVIVLCWHKSAWVAICFLLFFGSIEALYFSASLIKFLEGAWVPIALSLIFLIIMYVWHYGTVMKYEFDVQNKVAINWLLGLGPTLGIVRVKGIGLIHTELVAGIPAIFSHFVTNLPAFHQVVIFLCIKSVPVPHVAPRERFLVGRIGPKEYRLYRCIARYGYRDVHKDDMEFENDLICSIAEFIRSDISEYSSGLGSFEDDTKMTVVGTSSSNSEGVKISEDNQDNNSQIEGTSSELKEVKSPKKVKKRVRFVVPDSPRMDMDTRAELVELMEAKEAGMAFIMSHSYVRAKRGSSWIKKVVINYGYDFLRRNSRGPAYALSLPHASTLEVGMIYHV 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06071 777 NCBIfam potassium uptake protein 23 777 IPR003855 GO:0015079|GO:0016020|GO:0071805
Vifa1g06071 777 MobiDBLite consensus disorder prediction 650 683 - -
Vifa1g06071 777 Pfam K+ potassium transporter 25 605 IPR003855 GO:0015079|GO:0016020|GO:0071805
Vifa1g06071 777 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 13 776 IPR003855 GO:0015079|GO:0016020|GO:0071805
Vifa1g06071 777 MobiDBLite consensus disorder prediction 650 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06071 Vifa-Chr1 948513091 948518258 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06071 1 775 Inorganic Solute Cotransporters AT5G14880 76.306 0.0 1223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06071 K03549 - gmx:100793387 1358.58