Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06064 ATGGCAGATAATGAGAGTGATCCTACTTCTAATCACAAGGTTATTTTCCAAATTATTATTGCAATTTCAGCTGCATTTGTTGTTACTTCAGTGTACCGTCTCATAGCTATTTGTTTGTGTCACCGCGGACGAACCACAACAGATCAAAACCAACTACAACTACCGAATCACGCTGCGATACCTAGCCTCGAAAGGACATACTCATCAGTAGGTGTAGCACACCAAATTCCAACACACAAGTACCACAAAAGAAATAAAGTTGATGCTGTTTCGGATGATGAAGGTGACACCTGTGCCGTGTGTTTGGGAGATTTTGAGGAGGGTGAGGAGTTGAGGACTATGCCAGAGTGCTTGCACTCTTTTCATGTGCATTGCATTGACATGTGGCTCCATGCGCATTCGAGTTGCCCTATTTGTCGCACTGGTGCTGGTGCTGCACCTTTGCCGGTGGTGAGGGCAAATCATCATAGCATAGATATGAATATGTCTCCACTTGGTAGTGGTGCTGCTATGCAAAGTGGATTGTTGCGATGGTGA 537 0.4488 MADNESDPTSNHKVIFQIIIAISAAFVVTSVYRLIAICLCHRGRTTTDQNQLQLPNHAAIPSLERTYSSVGVAHQIPTHKYHKRNKVDAVSDDEGDTCAVCLGDFEEGEELRTMPECLHSFHVHCIDMWLHAHSSCPICRTGAGAAPLPVVRANHHSIDMNMSPLGSGAAMQSGLLRW 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06064 178 CDD RING-H2_EL5-like 98 140 - -
Vifa1g06064 178 Pfam Ring finger domain 96 140 IPR001841 -
Vifa1g06064 178 SMART ring_2 98 139 IPR001841 -
Vifa1g06064 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 144 IPR013083 -
Vifa1g06064 178 SUPERFAMILY RING/U-box 84 143 - -
Vifa1g06064 178 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 7 142 IPR044675 -
Vifa1g06064 178 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06064 Vifa-Chr1 947421568 947422104 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06064 18 164 C3H Transcription Factor Family AT1G04360 30.357 1.72e-21 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06064 - - mtr:11405522 193.356