Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06063 ATGGAAAATGATGAGGGTGACCCTATTTTTGGTCACAAGGTTATTTTCCAAATTATTTTCTTAGTTTCAATTGCATTTGTTGTTTCTTCAGTGTACCATCTCATAGCCATTTGTTTGTGTCACCGAGGAAGAACAACAAATCAAAACCAACTGCAACCACCGCATCACGCTGCCACACGGAGCCTCGAAGAAAGGACATCCTCATCAGTACCTGTAGTACACCGAATTCCAACACACAAGTACCACAAAAGAGATAAAGTTGATGCTGTTTCGGATGATGAAGGCGACACCTGTGCCGTGTGTTTGGGAGATTTTGAGGAGGGTGAGGAATTGAGAACTATGCCGGAGTGCTTGCACTCTTTTCATGTACCGTGTATTGATACGTGGCTCCATTCGCATTCGAGTTGCCCTATTTGTCGCGCTGGCGCTGGTGCTGGTGCTGACCCTCCACCGCCTTTGAGTGCAAATCATCACAGCATAAATATGAATATGGCTCCACTTGGTACTGTCATGCAAAGTGGATTGGCGTGA 531 0.4557 MENDEGDPIFGHKVIFQIIFLVSIAFVVSSVYHLIAICLCHRGRTTNQNQLQPPHHAATRSLEERTSSSVPVVHRIPTHKYHKRDKVDAVSDDEGDTCAVCLGDFEEGEELRTMPECLHSFHVPCIDTWLHSHSSCPICRAGAGAGADPPPPLSANHHSINMNMAPLGTVMQSGLA 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06063 176 CDD RING-H2_EL5-like 98 140 - -
Vifa1g06063 176 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Vifa1g06063 176 Pfam Ring finger domain 96 140 IPR001841 -
Vifa1g06063 176 SUPERFAMILY RING/U-box 87 149 - -
Vifa1g06063 176 MobiDBLite consensus disorder prediction 48 69 - -
Vifa1g06063 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 145 IPR013083 -
Vifa1g06063 176 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 12 142 IPR044675 -
Vifa1g06063 176 SMART ring_2 98 139 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06063 Vifa-Chr1 947407044 947407574 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06063 18 171 C3H Transcription Factor Family AT1G04360 32.184 2.02e-23 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06063 - - tpra:123904269 204.142