Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06062 ATGTGTAGCCATGCTTTTCATATAACTTGTATAGATACTTGGTTGCTTTCGAATTCAACTTGTCCTCTTTGTAGAGGAACACTTCAAACTAATGGATTTTCTATTGAAAACCCGATGTTTGATTTCGATGATCTTAGAGAAGACGACGGTTGTCCTTGTAACGGAGAAAACAGATTTGGTAATAGACAAAAGGAAATTGTTGTTGAAGATGATGCCGATAAAGGGGTTTTACCCGTTCGGCTTGGGAAATTCAAGAAGATGAACGCGGAAGCGGGTCGAGAGAACGAAGAAGTCGGTGAAACGAGTAGTAGTAAATTGGATGCAAGAAGATGTTACTCAATGGGATCTTATCAATATGTGGTTGGAAATTCAGAGTTAAGGGTAACTTTGGATGCATTAAACCATGAAAGTAAAATTCATCAAGATAGAACGATGAACAAAGGAATTGAAAATGGTGAGTATCTGTGTGTGGAAAGTGATTTGGAAGGAAAGAAGATTAGTAATGTTAGTAAAGGCGAAAGTTTTTCAATTTCGAAGATTTGGTTGTGGCCAAGGAAGGGAAAATTTTCTTCAAGTTCTTTAGAAGCACATAATGGAATGGCATTACCATCTTATCTTAACAAAGATTTGCAGCACCATGGAATGGGGGAAACAAATGGTGTATGA 666 0.3739 MCSHAFHITCIDTWLLSNSTCPLCRGTLQTNGFSIENPMFDFDDLREDDGCPCNGENRFGNRQKEIVVEDDADKGVLPVRLGKFKKMNAEAGRENEEVGETSSSKLDARRCYSMGSYQYVVGNSELRVTLDALNHESKIHQDRTMNKGIENGEYLCVESDLEGKKISNVSKGESFSISKIWLWPRKGKFSSSSLEAHNGMALPSYLNKDLQHHGMGETNGV 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06062 221 SUPERFAMILY RING/U-box 2 30 - -
Vifa1g06062 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 33 IPR013083 -
Vifa1g06062 221 ProSiteProfiles Zinc finger RING-type profile. 2 25 IPR001841 -
Vifa1g06062 221 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 181 - -
Vifa1g06062 221 Pfam RING-H2 zinc finger domain 2 25 IPR024766 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06062 Vifa-Chr1 946920003 946920668 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06062 2 188 C3H Transcription Factor Family AT2G18650 33.641 1.47e-19 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06062 - - adu:107490806 290.041