Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06061 ATGTCAGAAACTATGTATCCTAAATTGTTATTTGAACATACCCATTTGAGAATTCATCAAAAAGATGAATACTTTATGAATTTTCCACCACCACCACCATCACCATCATCACCAATACAATCTTCATCAAGCTCTTCAACAATAACACCACCACCATCTTCTTCGTCTTCTAGTACTAAGATTAGTCCAGCTGTTCTTTTCATCATAGTTGTTCTTGCTGTTCTTTTTTTCATATCTGGTTTACTTCATTTACTTGTTAGATTTCTCATAAAGCATCCATCTTCATCATCTTCTGCTCAATCTAATAGACAACACCATAATGAAATTTCAACTTCTGATGCACTTCAAAGACAGCTTCAACAGCTTTTTCATCTTCATGATTCTGGTTTAGATCAAGCTTTCATTGATGCACTTCCTGTTTTTCAATTCAAGGAAATTGTTGGTTTGAATGAGCCTTTTGATTGTGCTGTTTGTTTGTGTGAGTTTTCGGAGAAAGATAAGCTAAGATTGTTACCTATGTGTAGCCATGCTTTTCATATAACTTGTATAGATACTTGGTTGCTTTCGAATTCAACTTGTCCTCTTTGTAGAGGAACACTTCAAACTAATGGATTTTCTATTGAAAACCCGATGTTTGATTTCGATGATCTTAGAGAAGACGACGGTTGTCCTTGTAACGGAGAAAACAGATTTGGTAATAGACAAAAGGAAATTGTTGTTGAAGATGATGCCGATAAAGGGGTTTTACCCGTTCGGCTTGGGAAATTCAAGAAGATGAACGCGGAAGCGGGTCGAGAGAACGAAGAAGTCGGTGAAACGAGTAGTAGTAAATTGGATGCAAGAAGATGTTACTCAATGGGATCTTATCAATATGTGGTTGGAAATTCAGAGTTAAGGGTAACTTTGGATGCATTAAACCATGAAAGTAAAATTCATCAAGATAGAACGATGAACAAAGGAATTGAAAATGGTGAGTATCTGTGTGTGGAAAGTGATTTGGAAGGAAAGAAGATTAGTAATGTTAGTAAAGGCGAAAGTTTTTCAATTTCGAAGATTTGGTTGTGGCCAAGGAAGGGAAAATTTTCTTCAAGTTCTTTAGAAGCACATAATGGAATGGCATTACCATCTTATCTTAACAAAGATTTGCAGCACCATGGAATGGGGGAAACAAATGGTGTATGA 1182 0.3604 MSETMYPKLLFEHTHLRIHQKDEYFMNFPPPPPSPSSPIQSSSSSSTITPPPSSSSSSTKISPAVLFIIVVLAVLFFISGLLHLLVRFLIKHPSSSSSAQSNRQHHNEISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQFKEIVGLNEPFDCAVCLCEFSEKDKLRLLPMCSHAFHITCIDTWLLSNSTCPLCRGTLQTNGFSIENPMFDFDDLREDDGCPCNGENRFGNRQKEIVVEDDADKGVLPVRLGKFKKMNAEAGRENEEVGETSSSKLDARRCYSMGSYQYVVGNSELRVTLDALNHESKIHQDRTMNKGIENGEYLCVESDLEGKKISNVSKGESFSISKIWLWPRKGKFSSSSLEAHNGMALPSYLNKDLQHHGMGETNGV 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06061 393 SUPERFAMILY RING/U-box 134 202 - -
Vifa1g06061 393 ProSiteProfiles Zinc finger RING-type profile. 155 197 IPR001841 -
Vifa1g06061 393 FunFam RING-H2 finger protein ATL46 117 202 - -
Vifa1g06061 393 Pfam Ring finger domain 154 197 IPR001841 -
Vifa1g06061 393 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 56 353 - -
Vifa1g06061 393 MobiDBLite consensus disorder prediction 39 59 - -
Vifa1g06061 393 SMART ring_2 155 196 IPR001841 -
Vifa1g06061 393 MobiDBLite consensus disorder prediction 24 59 - -
Vifa1g06061 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 204 IPR013083 -
Vifa1g06061 393 CDD RING-H2_EL5-like 154 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06061 Vifa-Chr1 946919487 946920668 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06061 53 365 C3H Transcription Factor Family AT2G18650 39.943 1.21e-56 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06061 - - gmx:100806337 469.159