Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g06059 | ATGGCAGATGATACTGGTCACAATCCTCTATCTGACAAAGTTGTTATCCTCCTTATTGCCATGGGTTCAGCATTATTTGTTGTCTCATTGTACCATGTTATATCCATTTGTTTTTGCCGCCAACAACGAACCACCACAAACCAAAACTCACCACGGCTCGCCGCGGCAGACGAAGGCACATCGACGTCCTTAGCAAACATTATTCCAACGCATAAGTACCTCAAGAGAAGTAAAGATGTTTGGGATGATGAAGTCGGCGACACGTGCGCAGTGTGCTTGGGAGATTTTGAGGAGGGTGAAGAGTTGAGGACTATGCCTGAGTGTTTGCACTCCTTTCATGTACAGTGTATAGACATGTGGCTCCATTCGCATTCGAATTGTCCCATTTGCCGTGCCAGCGCCGCCCCTTCGCCGGCCGTGAATGAACAAGATCGCAGTGTAAATATTACTCCTACGGCGGCTCCACTTGCTATCATGCAACGTGGATTGGTGCGATGGTGA | 501 | 0.483 | MADDTGHNPLSDKVVILLIAMGSALFVVSLYHVISICFCRQQRTTTNQNSPRLAAADEGTSTSLANIIPTHKYLKRSKDVWDDEVGDTCAVCLGDFEEGEELRTMPECLHSFHVQCIDMWLHSHSNCPICRASAAPSPAVNEQDRSVNITPTAAPLAIMQRGLVRW | 166 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g06059 | 166 | Pfam | Ring finger domain | 87 | 131 | IPR001841 | - | |
Vifa1g06059 | 166 | ProSiteProfiles | Zinc finger RING-type profile. | 89 | 131 | IPR001841 | - | |
Vifa1g06059 | 166 | PANTHER | RING-H2 FINGER PROTEIN ATL51-RELATED | 11 | 135 | IPR044675 | - | |
Vifa1g06059 | 166 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 62 | 138 | IPR013083 | - | |
Vifa1g06059 | 166 | SMART | ring_2 | 89 | 130 | IPR001841 | - | |
Vifa1g06059 | 166 | CDD | RING-H2_EL5-like | 89 | 131 | - | - | |
Vifa1g06059 | 166 | SUPERFAMILY | RING/U-box | 79 | 137 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g06059 | Vifa-Chr1 | 946858918 | 946859418 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g06059 | 15 | 132 | C3H Transcription Factor Family | AT5G17600 | 38.168 | 1.83e-23 | 92.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g06059 | - | - | mtr:11405522 | 196.438 |