Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06059 ATGGCAGATGATACTGGTCACAATCCTCTATCTGACAAAGTTGTTATCCTCCTTATTGCCATGGGTTCAGCATTATTTGTTGTCTCATTGTACCATGTTATATCCATTTGTTTTTGCCGCCAACAACGAACCACCACAAACCAAAACTCACCACGGCTCGCCGCGGCAGACGAAGGCACATCGACGTCCTTAGCAAACATTATTCCAACGCATAAGTACCTCAAGAGAAGTAAAGATGTTTGGGATGATGAAGTCGGCGACACGTGCGCAGTGTGCTTGGGAGATTTTGAGGAGGGTGAAGAGTTGAGGACTATGCCTGAGTGTTTGCACTCCTTTCATGTACAGTGTATAGACATGTGGCTCCATTCGCATTCGAATTGTCCCATTTGCCGTGCCAGCGCCGCCCCTTCGCCGGCCGTGAATGAACAAGATCGCAGTGTAAATATTACTCCTACGGCGGCTCCACTTGCTATCATGCAACGTGGATTGGTGCGATGGTGA 501 0.483 MADDTGHNPLSDKVVILLIAMGSALFVVSLYHVISICFCRQQRTTTNQNSPRLAAADEGTSTSLANIIPTHKYLKRSKDVWDDEVGDTCAVCLGDFEEGEELRTMPECLHSFHVQCIDMWLHSHSNCPICRASAAPSPAVNEQDRSVNITPTAAPLAIMQRGLVRW 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06059 166 Pfam Ring finger domain 87 131 IPR001841 -
Vifa1g06059 166 ProSiteProfiles Zinc finger RING-type profile. 89 131 IPR001841 -
Vifa1g06059 166 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 135 IPR044675 -
Vifa1g06059 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 138 IPR013083 -
Vifa1g06059 166 SMART ring_2 89 130 IPR001841 -
Vifa1g06059 166 CDD RING-H2_EL5-like 89 131 - -
Vifa1g06059 166 SUPERFAMILY RING/U-box 79 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06059 Vifa-Chr1 946858918 946859418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06059 15 132 C3H Transcription Factor Family AT5G17600 38.168 1.83e-23 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06059 - - mtr:11405522 196.438