Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06049 ATGTCTTCTTCTTCAGAAGGTTACGCGATCGAGCTCTACATGGATCCCGCCCTCGAAAACCAAGTTCTGAAAGCCTGGAACGTCCTCGCCCGCCGCCAAATCAGCACGGAGTTAATCGAAATCGGATCACGCCCTCACATCACACTCTGCTCAACTCCCTTCCTTCTAGAACCTTCCAAACTCGAATCCCTTCTCAAATCCCTAACTTCCAAATTCGATCCGTTCCCTCTCTCTTTCTCTTCGATCTCTTCGTTCTCCAACGATAACAACGTTCTGTTTCTCTCACCTACTCCATCGATTTCTCTCCTTAATTTTCACTCAAATCTTGTGGACGCGGTTCGTAAGGAAGGGATTGAACTTTCTGAGGAGTTTTTGGCAGGGAATTGGATTCCGCATTGCGCTGTTGCGAATCGTGTGCCCAAACAGAGAATGGCGGAAGCTTTTTCGCTTCTTAGAGAGCTTAAATTGCCGGTTGCTGGTTATGCTGTTGATGTTGCGCTCGTCCAATTCTCGCCGGTTCGTGAGATTTTCTCCTTTGTGCTTGGTAATAACAGTAACTTTATAGAGAATTGA 573 0.4677 MSSSSEGYAIELYMDPALENQVLKAWNVLARRQISTELIEIGSRPHITLCSTPFLLEPSKLESLLKSLTSKFDPFPLSFSSISSFSNDNNVLFLSPTPSISLLNFHSNLVDAVRKEGIELSEEFLAGNWIPHCAVANRVPKQRMAEAFSLLRELKLPVAGYAVDVALVQFSPVREIFSFVLGNNSNFIEN 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06049 190 Pfam 2'-5' RNA ligase superfamily 44 168 - -
Vifa1g06049 190 SUPERFAMILY LigT-like 4 143 IPR009097 -
Vifa1g06049 190 PANTHER - 4 184 - -
Vifa1g06049 190 Gene3D Cyclic phosphodiesterase 8 183 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06049 5 184 Calmodulin-binding Proteins AT5G40190 63.889 2.52e-76 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06049 - - mtr:25495217 244.973