Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06041 ATGGAGTCCAGTGAGCATGAAAGTCTATCAGTTAGAGAGTTTCATGCAAATGGAAGCAGCATGAGTACATCAGAAGTTGAGGCTAAGCTTGATGAAGGAAATATTCAAGAGGCGGAATCTTCGTTGCGAGAAGGGTTGTCACTCAATTTCGAGGAAGCAAGGGCTCTTCTTGGGAAGTTGGAGTATCAGAGAGGTAATGTAGAAGGCGCTCTTCGTGTCTTTGATGGAATCGATCTCCAAGCTGCAATCCAGCGGTTGCAACCTTCCTTGTCTGAAAAGCCACCCGTCAAAAAAGGCCGCCCTCGCACAGAATCACCTTCTTCAGTCTCTCAACATGCTGCTAGTTTGGTGCTTGAAGCCATCTACTTAAAATCCAAGTCTCAACAAAAACTTGGGAAATTTGCTGAAGCTGCTAATGACTGTAAACAGATTCTTGATGCCGTTGAGAAGATATTTTATCAGGGTATACTTGATTTTCAAGTGGACAACAAATTGCAAGAGATAGTTAGTCATGCAGTAGAGCTCCTTCCAGAGCTTTGGAAACAAGGAGGTTGCTACGATGAGGCAATCTCTGCTTATAGGCGTGCCCTTCTTAGTCAATGGAACCTTGATAATGAATGTTGTTCAAGAATTCAGAAATCGTTTGTTGTTTTTCTTCTGTACAGTGGTGTGGAGGCAAGTCCACCCAGTTTAGCCGTTCAGATTGACGGCTCTTATGTGCCTAAAAATAATCTCGAAGAGGCGATTCTGCTTTTAATGATTCTTATAAGGAAGTTTTGTAATGGCAAGATAAAATGGGATCCTTCAATCATGGAACACCTAACTTTTGCATTTTCCATATGTAGCCAAACTTCTGTTTTAGCAAAGCAATTCGAAGACCTGATGCCTGGAGTATACCATCGTATTGATCGTTGGAATTCTTTAGCTTTATGTCATTTTGCAGCCGGGCTAAATGTCAGTGCTTTGAATCTGCTAAGAAAGTCGTTGCACAAACATGAACGTCCGGATGACCTTACATCGTTATTATTAGCTGCTAAGATCTGCAGCGAAGATCCTTATCTTGCTGGCGAGGGAGTCGGCCATGCACAGAGAGCATTCAGTAATGCTCATGGTCCGAATGAGCATTTAAAAGGTGTTGCTCTTCGGATATTAGGACTTTGTCTTGGAAAGCAAGCTAAGGTTGCTTCCTCAGATTTCGAAAGGTCTCGGCTTCAGTCCAAAGCTCTGGAGTCATTAGAGGAGGCAACTAAATTGGAGAAGAACAACGCTGATCTGATTTTTGAATTGGCTGTTCAGTATGCGAAGCATCGAAATTTGACTGCTGCTTTGCGTTCCGCGCGGCATTTCTTCAATGAAACTGGTGGCTCTGTAATCAAAGCTTGGATATTGCTTGCTCTGATTTTGTCTGCACAGCAAAGATTCCCGGAAGCTGAAGTGGTGACAGATGCTGGTTTAGATCAGACTGCGAGATGGGAGCAGGGGTCTCTGCTTAAGCTTAAAGCAAAGCTGAAGGTCTCCCAATTAAAACCGATGGATGCTATTGAAACTTATCGCTACCTTCTTGCATTGGTTCAAGCCCAGAGGAAATCCTCCGGGTCTTTCCAAATTAGTTCAAAGGTTGAAGATGATAAAGTTAATGAATTCGATATTTGGCACGGCCTTGCAAATTTATATGCCAGCCTTTCTCATTGGAAGGATGCTGAAATCTGTTTGCAAAAGGCGAGAGAGTTGAAGGAGTACTCTGCAGCAATTTTGCACACTGAAGGTATTTTGTTCGAAGGACGTGGCGAGAATATAGAAGCTCTCAATGCTTCTATTAATGCTGTACTAATTGAACCAAACCACATTCCTAGCAAAATCTTAATGAGTGCTTTGATTCACAAAATGGGTACAAAGGCGTTGCCTGCTGCAAGAAGCATGCTGTCTGATGCGCTTAGAATAGAACCAACCAACCGGATGGCTTGGTATTACTTGGGATTGGTTCACAAGCACGATGGCCGAATCAGTGATGCTGCAGACTGCTTCCAGGCAGCTTCCATGCTGGAAGAATTAGATCCCATTGAAAGTTTCAGCACCTTATTTTGA 2085 0.4317 MESSEHESLSVREFHANGSSMSTSEVEAKLDEGNIQEAESSLREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPSLSEKPPVKKGRPRTESPSSVSQHAASLVLEAIYLKSKSQQKLGKFAEAANDCKQILDAVEKIFYQGILDFQVDNKLQEIVSHAVELLPELWKQGGCYDEAISAYRRALLSQWNLDNECCSRIQKSFVVFLLYSGVEASPPSLAVQIDGSYVPKNNLEEAILLLMILIRKFCNGKIKWDPSIMEHLTFAFSICSQTSVLAKQFEDLMPGVYHRIDRWNSLALCHFAAGLNVSALNLLRKSLHKHERPDDLTSLLLAAKICSEDPYLAGEGVGHAQRAFSNAHGPNEHLKGVALRILGLCLGKQAKVASSDFERSRLQSKALESLEEATKLEKNNADLIFELAVQYAKHRNLTAALRSARHFFNETGGSVIKAWILLALILSAQQRFPEAEVVTDAGLDQTARWEQGSLLKLKAKLKVSQLKPMDAIETYRYLLALVQAQRKSSGSFQISSKVEDDKVNEFDIWHGLANLYASLSHWKDAEICLQKARELKEYSAAILHTEGILFEGRGENIEALNASINAVLIEPNHIPSKILMSALIHKMGTKALPAARSMLSDALRIEPTNRMAWYYLGLVHKHDGRISDAADCFQAASMLEELDPIESFSTLF 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06041 694 MobiDBLite consensus disorder prediction 1 37 - -
Vifa1g06041 694 Gene3D Tetratricopeptide repeat domain 24 213 IPR011990 GO:0005515
Vifa1g06041 694 PANTHER PROTEIN NPG1 5 691 IPR043376 -
Vifa1g06041 694 MobiDBLite consensus disorder prediction 13 29 - -
Vifa1g06041 694 SUPERFAMILY TPR-like 403 678 IPR011990 GO:0005515
Vifa1g06041 694 Gene3D Tetratricopeptide repeat domain 242 453 IPR011990 GO:0005515
Vifa1g06041 694 Coils Coil 401 421 - -
Vifa1g06041 694 SUPERFAMILY TPR-like 53 332 IPR011990 GO:0005515
Vifa1g06041 694 Gene3D Tetratricopeptide repeat domain 454 689 IPR011990 GO:0005515
Vifa1g06041 694 SMART tpr_5 582 615 IPR019734 GO:0005515
Vifa1g06041 694 SMART tpr_5 548 581 IPR019734 GO:0005515
Vifa1g06041 694 SMART tpr_5 118 151 IPR019734 GO:0005515
Vifa1g06041 694 SMART tpr_5 652 685 IPR019734 GO:0005515
Vifa1g06041 694 SMART tpr_5 458 491 IPR019734 GO:0005515
Vifa1g06041 694 SMART tpr_5 302 335 IPR019734 GO:0005515
Vifa1g06041 694 MobiDBLite consensus disorder prediction 90 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06041 Vifa-Chr1 944784753 944787584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06041 3 694 Calmodulin-binding Proteins AT2G43040 70.402 0.0 966
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06041 K21843 - gmx:100814609 1159.44