Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06036 ATGTATGGGTTCGGTGGTGAGAAGTGGAAACACAATCGGCACATGTGGCCTGTACCTTCTAACGCGACCACTGTAGTCACCGTTTCTTCACCGTCTCAATTTATATGCAAAGATGGACGCAAGATTCGTGTTGGTGACTGTGCACTTTTCAAACCACCCCAGGACTCCCCTCCTTTTATTGGAATAATTCGCAAGATAACATTTGATAAAGAAGAAAGTCCAACTTTAGAAGTGAATTGGTTTTACCGACCTGCTGATTTGAATCTCTCTAAAGGGATTGTGCTGGAAGCTGCACCAAACGAAGTGTTCTACTCCTTTCACAAGGATGAGATACATGCTGCATCATTACTCCATCCTTGTAAAGTCGCATTTCTCCGTAAAGGTGTTGAACTTCCTTCAGGGATATCCGCATTTGTTTGTAGGCGAGTGTATGACATTGAGAACACTTGTTTACGGTGGCTAACCGATAAGGACTACATTAATGAACAGCAGGAAGAAGTTTACCAGCTTTTAGATAAGACAAAACTAGAAATGCATGGGGCTGTGCAGTCAGGAGGCCGTTCTCCGAAACCCTTGAATGGTCCAACGTCAACGCAGTCATTGAAATCTAGTTCTGATAACATTCAAAATAGTTCTTCCTTTGGTGTACAGGGTAAGGGAAAAAAGAGAGAAAGAGGTGATCAGGGATCTGATTCATCTAAAAAAGAGCGATTATTTAAAGTAGAAGATGGAGATTCTGGTCAATTTAGACCAGAGAGCATGCTAAGGTCTGAGATTGCTAAAATCACTGATAATAAAGGTGGGCTTGTGGACTCTGACGGTGTTAAAAGACTTCTGCAACTCATGCAACCTGACAGTGCTGATAAAAAAATAGATTTGTCAGGGCGAATAATGCTTGTTGATGTAATATCGCTCACAGAGCGGTATGACTGTCTTTGCTGGTTTGTACAGATTCGGGGTTTGCCTGTGTTAGATGAATGGCTGCAGGAGGTCCATAAGGGCAAAATTGGCGATGGTAATGTTGATAAGTCTGAAGAGTTTTTGTTAGCGTTACTTCGTGCATTGGATAATCTTCCCGTGAACCTTCATGCACTACAAACCTGTAATGTTGGAAAATCTGTTAATAATTTACGTAGCCACAAAAATTCTGAAATTCAGAGGAAAGCCCGGACTTTGGTAGACACGTGGAAGAAGCGTGTTGAAGCTGAAATGAATATGACTGATACAAAAACTGGTTCAACCCGTGCTGTTTCTTGGCCTGCAAAGCCAACACCATCAGATGTTTCTCACTCCGGAAATAGGAAAACAGTAGGATCCTCTGAGAATGTTGTGAAGAGCTCTGCTATTCAACCTTCAACATCCAAAAATTCCCAATCTAAACTTAATTCTGGAGAAGTAGCATTGAAGTTCTCTTCATCCCCTGGCTCAACTAAATCTGGGTCTGCCTTAGTATGCAGCAACTCAAAAGATCAAAATGTTAAACCTGTTGTTTGTGCAACATCAGATCTACCTCTGACACCTATCAAGGAGGAGAGGAGCAGCAGTTCTAGTCAATCTCAAAACAACAGCAGATCTTGTTCTACTGAACACGCAAAGGCTATTGGTTCTTGCCGGGAAGATGCAAAGAGCTCCTCTGCAGTGTCAATGAGTGTGAACAAAGTACCTGGTGCTGCATCCCGATCTCGGAAGTCTAGTAATGGTGTACATGGAGCTGGTATTGCTGCAGTTCAGAAGGATCATAGTTCTGCCAAGAACTCAGCAAGAAATTCACCTTCTGATAAAGTTTCCCCGACTCGAATGTCCCAAGAAAAACCATCCGATCAGCCCCTTACTGATCAAGGGCATAATCAGCGACTGATTCTCAGGTTGCCTAACACCGGCCGCAGTCCTTCAAGGGGAGCTAGCGGGGGCACTTTTGAAGAACCTTCTTTTACATGTGGCAAAACATCACCTCCTGCCGACATCAAAAAGGATAATCAGGACAGAAGAGTTAAAGCTAAAATTGATTGTTTGCAGACCCATGTGTCGAATGTGATAAATGATGCGTCTAATACTAATGACACTACTGCTTGTGATGAAGCTAAGGGCTCTCCATCGGTGGGCGAGCGTTGCAGGGCTAATGATGATGGTGATAAAGCTGCAGAAATACCAAAAACAACTTGTTCTTCAACTGGATTTGTTTCCAGATCAGGAGAAATGTCCAGATCTGAAAACGTATCGCCTCTGCCTTCACCCGAGAGGAAGTCTCCTGCAGCTGATGAATCAAGCTCAGGGAATGACTCCAAGTTAAGACATTCTCTTGAAGGAGCTGCACGCACTCTTGGACATTCTGATGGCGGGTTTACTGGAGAGCATACTCGGAAAACTGTGGAGCCATTGCAATTCAAAAAGGATTCTAGGCATCCTTTGATGACAATATCGCATGATTTTTCAGATGGTGAAGCCGTTTCATCTGGCCGTCTGGAGAAAAATGGTGACAGCAAAACTCAAATAAATTTCTCTACTACCGATGCAATACAAAATGCTGAAGGTCCATGCTTACGGCCGGACACCAAAGAGGACACTTCCGAAACTGTTTTTTCAGGTAGAAAGGAGACTATTGCAGAAGTTGGAGGAGCAGAGCGTTTTCAGGAGCAGAGGGAATCAGGAACTCAATGGGCTAAAAACTGCAGTAGTTCCAGCTCTAAATTGAAGTCGGGGACTTCCTCGTTTGATGATGATCAGAAGATTGCTAACATGGTTGGCGGTATTGCAGAGCACGAGAAAATGTTGGTTTCAGAAACCATTGCAAGTAGTATGAATGAAAATGAACAAGGTAAAAGATCCCCCGAGTTATCTTCTGGTGCAGATAGTAAGACCCAGATCAGTGCAGATAAAGTGACAGGTAATGTTATGCCGGTGCAAAAAGGCTCGTCAGTTACAGATAACTGCGAGTCCATTGATTTAAAAAGGGAGTCACCTTCTTCTGGTAATGCTTTGACGGTAGCCAGGGATGAAAATGATAATCATGTGATGCCAGGTGATATTGAAACTGATGAAAAACAAAAGGATCTGGATTCAGCAGTTGCAGATGATGTTAATGAACGTTCTGAAGAGAATTTTGGTAGAAAAGAGGTTAGTGGCTCTGGTTCATTAGCTCACCCAGATTTACCAATTTCTGTAAAAGAGAACGAAGATCTGAAAACATGTGATTCTATTCTTGAAAGAAAGAAATCTGCAGTTGCTGCAGAGTTGAATGCGGGCAATGCTAATCTATCCCCAATTGCTTGTGGTTCTGATGCAGCTGTAAAACTGGACTTTGATTTAAATGAGGGTTACCCTGTTGAGGATGTAGGCCAGGGGGATATTGTTAGACAGGAAGAACCTATCAGTTCATCTGCAGTTCATGCTCCTTGCCCATTGCCTTTTCCCATTCCGTCCCTCTCTGGGGCCTTCCATGCTTCAATTACAGTAGCTTCTGCTGCCAAAGGACCGGTTGTTCCGCCAGAAAATCCGTTGCGAAGTAAGGGGGAACTTGGGTGGAAAGGATCAGCTGCTACAAGTGCATTCCGGCCAGCTGAACCTAGGAAAAATGCTGAGATGCCATCAAATACTGTTGATATTCCACCAGTCGACGCCACTTCAGTCAAACAAGACCGCGCTCCCTTAGATTTTGATTTAAATGTTGCAGATGAAGTCGGTTTTGAGGACGTTGCTTACCGAGGTGACTTAGAGTCCGGTGCTCATGACCGCAGCTCTGTGGGGTTTGATCTTGATCTAAACAGGTTGGACGAGACTCCTGAAGTTGGATCTTTCTCTATGGGTAAAATGGATATTCCTTTACCGAGTAAACAACCTTCATTGTCCAGTGGGTTATCTAATGGTGGAAGTGTCTCAAGAGACTTCGATTTAAATAATGGACCAGGCCTTGATGAAGTTAGCACCGAAGTCCCAACTCGTACTCTGCAGATGAAAAGTACTATCCCATTTTCAAGTTCTGTTCATGGCACTAGAACAAATAATGCAGAATTTGGAAATTATTCTTCATGGTTTCCTCCGGGCAATTCGTATTCTGCAATTACTGTCCCACCACTTCTGACAGGTAGGGGGGAGCAGAGTTATGTTGGCGGTTCTGGGACACAGCGGATCATAGGTTCTACAGGTAGCACACCTTTTAGTCCTGAAATGTACAGAGGGCCAGTGCTCTCATCCTCCCCAGCTGTTGCATATCCATCTTCTACTCCCTTTCCATATCCAGGATTTCCATTTGAAACCAATTTTCCGTTATCTTCAAATGCTTTTTCTGGTTGTTCAACACCGTTTATGGATTCAACAACTGTGGGTGGACTTTGCTTTCCTACCATGCCCTCACAGCCCATTGGGCCTGGTGGCATTGTCTCATCCACATATCCACGTCCCTATGTTATGAGTCTTCCAGGTGGTACAAGCAACGTAATTCCCGACAGCAGAAAATGGGGTAGTCAGAGTCTGGATCTTAATTCAGGCCCTGGTGTTACGGATACCGAGCGCAGAGATGACAGATTGCCTTCAGGATTGAGACAGATGCCTGTCTCCAGTCAACAAGCCTTGATGGAGGATCATTTGAAGATGTTTCAGATGGCCGGTGCATTAAAAAGGAAAGAACCTGATGGTGGTTGGGATGGAACTGATAGATTCAGTTACAAACATCCCTCATGGCAATAG 4683 0.4395 MYGFGGEKWKHNRHMWPVPSNATTVVTVSSPSQFICKDGRKIRVGDCALFKPPQDSPPFIGIIRKITFDKEESPTLEVNWFYRPADLNLSKGIVLEAAPNEVFYSFHKDEIHAASLLHPCKVAFLRKGVELPSGISAFVCRRVYDIENTCLRWLTDKDYINEQQEEVYQLLDKTKLEMHGAVQSGGRSPKPLNGPTSTQSLKSSSDNIQNSSSFGVQGKGKKRERGDQGSDSSKKERLFKVEDGDSGQFRPESMLRSEIAKITDNKGGLVDSDGVKRLLQLMQPDSADKKIDLSGRIMLVDVISLTERYDCLCWFVQIRGLPVLDEWLQEVHKGKIGDGNVDKSEEFLLALLRALDNLPVNLHALQTCNVGKSVNNLRSHKNSEIQRKARTLVDTWKKRVEAEMNMTDTKTGSTRAVSWPAKPTPSDVSHSGNRKTVGSSENVVKSSAIQPSTSKNSQSKLNSGEVALKFSSSPGSTKSGSALVCSNSKDQNVKPVVCATSDLPLTPIKEERSSSSSQSQNNSRSCSTEHAKAIGSCREDAKSSSAVSMSVNKVPGAASRSRKSSNGVHGAGIAAVQKDHSSAKNSARNSPSDKVSPTRMSQEKPSDQPLTDQGHNQRLILRLPNTGRSPSRGASGGTFEEPSFTCGKTSPPADIKKDNQDRRVKAKIDCLQTHVSNVINDASNTNDTTACDEAKGSPSVGERCRANDDGDKAAEIPKTTCSSTGFVSRSGEMSRSENVSPLPSPERKSPAADESSSGNDSKLRHSLEGAARTLGHSDGGFTGEHTRKTVEPLQFKKDSRHPLMTISHDFSDGEAVSSGRLEKNGDSKTQINFSTTDAIQNAEGPCLRPDTKEDTSETVFSGRKETIAEVGGAERFQEQRESGTQWAKNCSSSSSKLKSGTSSFDDDQKIANMVGGIAEHEKMLVSETIASSMNENEQGKRSPELSSGADSKTQISADKVTGNVMPVQKGSSVTDNCESIDLKRESPSSGNALTVARDENDNHVMPGDIETDEKQKDLDSAVADDVNERSEENFGRKEVSGSGSLAHPDLPISVKENEDLKTCDSILERKKSAVAAELNAGNANLSPIACGSDAAVKLDFDLNEGYPVEDVGQGDIVRQEEPISSSAVHAPCPLPFPIPSLSGAFHASITVASAAKGPVVPPENPLRSKGELGWKGSAATSAFRPAEPRKNAEMPSNTVDIPPVDATSVKQDRAPLDFDLNVADEVGFEDVAYRGDLESGAHDRSSVGFDLDLNRLDETPEVGSFSMGKMDIPLPSKQPSLSSGLSNGGSVSRDFDLNNGPGLDEVSTEVPTRTLQMKSTIPFSSSVHGTRTNNAEFGNYSSWFPPGNSYSAITVPPLLTGRGEQSYVGGSGTQRIIGSTGSTPFSPEMYRGPVLSSSPAVAYPSSTPFPYPGFPFETNFPLSSNAFSGCSTPFMDSTTVGGLCFPTMPSQPIGPGGIVSSTYPRPYVMSLPGGTSNVIPDSRKWGSQSLDLNSGPGVTDTERRDDRLPSGLRQMPVSSQQALMEDHLKMFQMAGALKRKEPDGGWDGTDRFSYKHPSWQ 1560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06036 1560 MobiDBLite consensus disorder prediction 218 249 - -
Vifa1g06036 1560 MobiDBLite consensus disorder prediction 403 461 - -
Vifa1g06036 1560 MobiDBLite consensus disorder prediction 505 660 - -
Vifa1g06036 1560 MobiDBLite consensus disorder prediction 1276 1290 - -
Vifa1g06036 1560 CDD TFIIS_I 332 401 - -
Vifa1g06036 1560 MobiDBLite consensus disorder prediction 507 530 - -
Vifa1g06036 1560 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 310 413 IPR035441 -
Vifa1g06036 1560 MobiDBLite consensus disorder prediction 1264 1290 - -
Vifa1g06036 1560 MobiDBLite consensus disorder prediction 541 566 - -
Vifa1g06036 1560 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 731 1560 - -
Vifa1g06036 1560 SMART TFS2_5 328 402 IPR003617 GO:0005634
Vifa1g06036 1560 MobiDBLite consensus disorder prediction 1156 1204 - -
Vifa1g06036 1560 MobiDBLite consensus disorder prediction 927 996 - -
Vifa1g06036 1560 SMART BAH_4 40 155 IPR001025 GO:0003682
Vifa1g06036 1560 ProSiteProfiles BAH domain profile. 40 155 IPR001025 GO:0003682
Vifa1g06036 1560 Pfam TFIIS helical bundle-like domain 351 400 IPR017923 -
Vifa1g06036 1560 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 273 404 IPR035441 -
Vifa1g06036 1560 MobiDBLite consensus disorder prediction 179 252 - -
Vifa1g06036 1560 MobiDBLite consensus disorder prediction 926 1050 - -
Vifa1g06036 1560 ProSiteProfiles TFIIS N-terminal domain profile. 322 403 IPR017923 -
Vifa1g06036 1560 MobiDBLite consensus disorder prediction 1001 1036 - -
Vifa1g06036 1560 MobiDBLite consensus disorder prediction 189 217 - -
Vifa1g06036 1560 MobiDBLite consensus disorder prediction 781 807 - -
Vifa1g06036 1560 MobiDBLite consensus disorder prediction 406 461 - -
Vifa1g06036 1560 MobiDBLite consensus disorder prediction 698 715 - -
Vifa1g06036 1560 MobiDBLite consensus disorder prediction 717 743 - -
Vifa1g06036 1560 Gene3D - 24 252 IPR043151 -
Vifa1g06036 1560 MobiDBLite consensus disorder prediction 822 841 - -
Vifa1g06036 1560 MobiDBLite consensus disorder prediction 878 907 - -
Vifa1g06036 1560 MobiDBLite consensus disorder prediction 1539 1560 - -
Vifa1g06036 1560 MobiDBLite consensus disorder prediction 579 645 - -
Vifa1g06036 1560 MobiDBLite consensus disorder prediction 1481 1511 - -
Vifa1g06036 1560 MobiDBLite consensus disorder prediction 1481 1496 - -
Vifa1g06036 1560 MobiDBLite consensus disorder prediction 684 907 - -
Vifa1g06036 1560 Pfam BAH domain 41 147 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06036 Vifa-Chr1 944625197 944631181 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vifa1g06036 BAH 2.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06036 - - gmx:112998769 2192.93