Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g06032 | ATGAGGAAAATTATGAAAATCCAAGTGTTAGCTGAACATGAGAAAAAAATTCAAACTGAGGTGAAAGAAATCTGGAAGGTGTTTTATTGTGAACTCTGCAACAAGCAATACAAATTAGCAATGGAATTTGAAGCACACTTGAGCTCTTATGATCATAATAACAGGAAGGAAATGCATGAGTCTGGATCTACACCAGTTTCAATTTCCTCTGAATCTAGGACTGCTATTGCTCTAATAGACCAGGAGCAGCGAAATACTTTGAAGTTCGGGTTTTCTTCTAAAGGATTTGCTTCCAAGCTCATGATGATTTGTTCAAATTCAAGTCTTAACCGTTTCAACCCTGCCAACCCAGTACTCGCTTAG | 363 | 0.3774 | MRKIMKIQVLAEHEKKIQTEVKEIWKVFYCELCNKQYKLAMEFEAHLSSYDHNNRKEMHESGSTPVSISSESRTAIALIDQEQRNTLKFGFSSKGFASKLMMICSNSSLNRFNPANPVLA | 120 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g06032 | 120 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 30 | 52 | IPR013087 | - | |
Vifa1g06032 | 120 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 28 | 57 | IPR013087 | - | |
Vifa1g06032 | 120 | Pfam | Zinc-finger double-stranded RNA-binding | 28 | 49 | IPR022755 | - | |
Vifa1g06032 | 120 | PANTHER | FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED | 3 | 60 | - | - | |
Vifa1g06032 | 120 | SUPERFAMILY | beta-beta-alpha zinc fingers | 25 | 59 | IPR036236 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g06032 | Vifa-Chr1 | 943828049 | 943828868 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g06032 | 6 | 91 | C2H2 Transcription Factor Family | AT5G26610 | 41.860 | 5.27e-24 | 91.7 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Vifa1g06032 | zf-C2H2_jaz | 8e-06 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g06032 | - | - | vum:124824962 | 135.576 |