Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06032 ATGAGGAAAATTATGAAAATCCAAGTGTTAGCTGAACATGAGAAAAAAATTCAAACTGAGGTGAAAGAAATCTGGAAGGTGTTTTATTGTGAACTCTGCAACAAGCAATACAAATTAGCAATGGAATTTGAAGCACACTTGAGCTCTTATGATCATAATAACAGGAAGGAAATGCATGAGTCTGGATCTACACCAGTTTCAATTTCCTCTGAATCTAGGACTGCTATTGCTCTAATAGACCAGGAGCAGCGAAATACTTTGAAGTTCGGGTTTTCTTCTAAAGGATTTGCTTCCAAGCTCATGATGATTTGTTCAAATTCAAGTCTTAACCGTTTCAACCCTGCCAACCCAGTACTCGCTTAG 363 0.3774 MRKIMKIQVLAEHEKKIQTEVKEIWKVFYCELCNKQYKLAMEFEAHLSSYDHNNRKEMHESGSTPVSISSESRTAIALIDQEQRNTLKFGFSSKGFASKLMMICSNSSLNRFNPANPVLA 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06032 120 ProSitePatterns Zinc finger C2H2 type domain signature. 30 52 IPR013087 -
Vifa1g06032 120 ProSiteProfiles Zinc finger C2H2 type domain profile. 28 57 IPR013087 -
Vifa1g06032 120 Pfam Zinc-finger double-stranded RNA-binding 28 49 IPR022755 -
Vifa1g06032 120 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 3 60 - -
Vifa1g06032 120 SUPERFAMILY beta-beta-alpha zinc fingers 25 59 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06032 Vifa-Chr1 943828049 943828868 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06032 6 91 C2H2 Transcription Factor Family AT5G26610 41.860 5.27e-24 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa1g06032 zf-C2H2_jaz 8e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06032 - - vum:124824962 135.576