Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06031 ATGAGTTTTTATTACCTGGTGACTTCTTCTGCATGCTTCAGGAAAATTATGAAAATCCAAGTGTTAGCTGAACATGAGAAAAAAATTCAAACTGAGGTGAAAGAAATCTGGAAGGTGTTTTATTGTGAACTCTGCAACAAGCAATACAAATTAGCAATGGAATTTGAAGCACACTTGAGCTCTTATGATCATAATAACAGGAAGGAAATGCATGAGTCTGGATCTACACCAGTTTCAATTTCCTCTGAATCTAGGACTGCTATTGCTCTAATAGACCAGGAGCAGCGAAATACTTTGAAGTTCGGGTTTTCTTCTAAAGGATTTGCTTCCAAGCTCATGATGATTTGTTCAAATTCAAGTCTTAACCGTTTCAACCCTGCCAACCCAGTACTCGCTTAG 399 0.3784 MSFYYLVTSSACFRKIMKIQVLAEHEKKIQTEVKEIWKVFYCELCNKQYKLAMEFEAHLSSYDHNNRKEMHESGSTPVSISSESRTAIALIDQEQRNTLKFGFSSKGFASKLMMICSNSSLNRFNPANPVLA 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06031 132 SUPERFAMILY beta-beta-alpha zinc fingers 37 71 IPR036236 -
Vifa1g06031 132 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 69 IPR013087 -
Vifa1g06031 132 ProSitePatterns Zinc finger C2H2 type domain signature. 42 64 IPR013087 -
Vifa1g06031 132 Pfam Zinc-finger double-stranded RNA-binding 40 61 IPR022755 -
Vifa1g06031 132 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 15 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06031 Vifa-Chr1 943828049 943828868 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06031 18 103 C2H2 Transcription Factor Family AT5G26610 41.860 1.10e-23 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06031 - - gsj:114407513 152.14