Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06030 ATGGCTCTGAGTCTGACACCAGGTGCGATAAAGAAGATGTGTTTCACCTCGTCGGAGGAGGAATTTCAACCGGTGCTGCAACTTATCGATCTGAAACTTGTTCACTCGTCACAGAATACCACTACTGAGAGGTACCGAGCCGTGCTGTCTGATGGCGAGTTTTATGAACAAGGAATGCTCGCTACCCAGAAGAATGGTCTCGTTCATGCTGGAAGGTTGCAAAAAGGTTCCATTGTTAAGCTTACTCAGTTCGTTACTAACGATGTTCAGCGTCGCAAGATTATTATCATTGTTGACCTTGAAGTTCTAATGGACATATGTGACATGATTGGAAAACCTGCCCCAGCACCAAAAGAAGCACCTGCACAAAGTCCTGTTATTCAAACAGGAAATGTACAACCAGCTTTAGGAAACACTGCTGGAAATGCAGCTAGCGTTAATGTTAGACCAAATGTAGCTGTGCCATCTGTGGATCGTTCGAAAGTGAATTCTCCTGCTAGCAGTGTTTATTCTAACAACTCTGAATCTGCACGATATGGTGCATCTTATGCTCCTCCTCCCTCTTATCCTAAACCTGAGCCTGGAGTCAGTGTGATTCGGCCAACAGCTGTCAATGGTTCTTATGGTGAGCAGAATGCAACTTTCCGCAATCCTCAACAACCATTGCAAAATTCTCATGTTCGCCCTCCTCAGCCTATGTACAGACAGCCAACTCCATATGCCAATAGAGGTCCCATGGGAAGAAATGATGCTCCCCCAAGGATAATTCCAATATCTGCATTGAATCCATATCAAAATATGTGGACAATTAAAGCTAGAGTAACTGCTAAGGGAGAACTTAGGCTCTATAACAATGCCCGAGGTGAGGGAAAAGTATTTTCTTTTGATCTTTTGGATTCTGCAGCTGGAGAAATACGGGCCACTTGCTTTAATGCAGTGGCTGATAAGTTCTATAGCCTAATTGAAGTAGGTAAAGTCTATTTGGTTTCTCGGGGAACTTTAAAAGCAGCTCAGAGAAGTTTTAATCACCTTCCTAATGATCAAGAGATAACCCTTGACGCCACATCGGATGTAGTGCCATGCCCTGAAGATGATAACGCAATTCCACAACAAATATATAATTTCCGTTCCATTGGTGACATTGAGAGTATTGAAAGCAACAGTATTGTGGATGTTGTTGCTGTGGTGACTTCTATTAGTCCCACAGCTTCAATCATGAGAAAAAATGGCACCGAAACACAGAAGAGATCTCTCCAGTTGAAAGACATGTCTGGCCGAAGCGTTGAATTAACTATATGGGGAAACTTTTGCAACACTGAAGGACAGAGGCTTCAAAATATTTGTGACTCCGGGGCATTTCCAATTTTAGCTGTAAAATCTGCCAGAGTAAATGATTTCAATGGGAAATCTGTTGGGACCATAGCCACCAGCCAATTAATTGTAGAACCTGATTTTCCAGAGGCTACTACACTGAGAGAATGGTTTGAAAATGAAGGTAGGAATGTCCCAAGTCAATCTATTTCCAAAGATTCATCTTTTGGTAAAAGTGATGTGCGTAAGACTATATCTCAAATTAAGGATGAAAAGTTAGGGACTTCAGAGAAGCCTGACTGGATAACTGTCTGTGCAAGTGTTGCGTACATTAAAGTTGATAATTTTTGCTACACAGCTTGTCCTCTCATGACAGGAGATAGGCAATGTAACAAAAAGGTTACCAACAATGGAGATGGGAAATGGCGCTGTGACAAGTGTGACAAGTCTGTTGATGCTTGTGATTATAGGTACTTGCTGCAAATGCAGATACAGGATCACACTGGCCAAACATGGGTTACTGCTTTCCAGGAGGGTGGGGAGGATATCTTGGGTATATCTGCAAAAGATTTGTATTTTCTGAAATATGAAGAACAAGATGAAGAAAAATTTGCAGAAATCATTCGCAAGGTTGTCTTAACTAGATATATTTTCAAGCTAAAAGTAAAAGAAGAGATGTACAATGATGAACAACGCGTTAAGTCAACGTTAGTAAAAGTAGAGAAGTTAAACTTTGCATCTGATGCTAGATCTCTTCTGGATATGATTGATAAACTTAAGTCTGGAACTGGACTGGGGAGTGTTGAAACTGGACAAGCTGCGCCACCAGTATATACTCCTACAAAGAGTTACACTAATACTGGTAGAGATTATGGGACAGCAAATCAAGTGGGTCGGTATGGAAACCAACCTGACAGTTCTTTTACTTCATCAGGGGCTCCAAATTCTTACATGTCATGTAGTAACTGTGGTGTCTCTGGTCATAGCTCTGCACAATGCTTAAACATTAGAAATCAATCTGGCCAGTCTAATGGAGGGTCCTTTGCCAACAGAGTATCTACTGGATCAGATGGTGCTTCTAGTAATTGCTTTAAATGCAATCAAGCTGGACATTGGGCAAGAGACTGTCCTGGTGTCACTGCTGCACAACCTGATCAGCGTTTGCAGTTCCCATCGGCTGGATCAGGTGGTGCTCCTGGTGAATGTTTTAAATGCCATCAAGCTGGGCATTGGGCAAGAGACTGTCCTGGTATCAGTGCAGCACCTCCATCTCATGGAAACAGCAATGCAGTGCAAGGAAGATATGGCATTGCTCAAAATCAGCAGTATGGAAGATATTGA 2652 0.4223 MALSLTPGAIKKMCFTSSEEEFQPVLQLIDLKLVHSSQNTTTERYRAVLSDGEFYEQGMLATQKNGLVHAGRLQKGSIVKLTQFVTNDVQRRKIIIIVDLEVLMDICDMIGKPAPAPKEAPAQSPVIQTGNVQPALGNTAGNAASVNVRPNVAVPSVDRSKVNSPASSVYSNNSESARYGASYAPPPSYPKPEPGVSVIRPTAVNGSYGEQNATFRNPQQPLQNSHVRPPQPMYRQPTPYANRGPMGRNDAPPRIIPISALNPYQNMWTIKARVTAKGELRLYNNARGEGKVFSFDLLDSAAGEIRATCFNAVADKFYSLIEVGKVYLVSRGTLKAAQRSFNHLPNDQEITLDATSDVVPCPEDDNAIPQQIYNFRSIGDIESIESNSIVDVVAVVTSISPTASIMRKNGTETQKRSLQLKDMSGRSVELTIWGNFCNTEGQRLQNICDSGAFPILAVKSARVNDFNGKSVGTIATSQLIVEPDFPEATTLREWFENEGRNVPSQSISKDSSFGKSDVRKTISQIKDEKLGTSEKPDWITVCASVAYIKVDNFCYTACPLMTGDRQCNKKVTNNGDGKWRCDKCDKSVDACDYRYLLQMQIQDHTGQTWVTAFQEGGEDILGISAKDLYFLKYEEQDEEKFAEIIRKVVLTRYIFKLKVKEEMYNDEQRVKSTLVKVEKLNFASDARSLLDMIDKLKSGTGLGSVETGQAAPPVYTPTKSYTNTGRDYGTANQVGRYGNQPDSSFTSSGAPNSYMSCSNCGVSGHSSAQCLNIRNQSGQSNGGSFANRVSTGSDGASSNCFKCNQAGHWARDCPGVTAAQPDQRLQFPSAGSGGAPGECFKCHQAGHWARDCPGISAAPPSHGNSNAVQGRYGIAQNQQYGRY 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06030 883 Pfam OB-fold nucleic acid binding domain 268 355 IPR004365 GO:0003676
Vifa1g06030 883 FunFam Replication protein A subunit 367 505 - -
Vifa1g06030 883 Gene3D - 752 826 - -
Vifa1g06030 883 SUPERFAMILY Retrovirus zinc finger-like domains 791 854 IPR036875 GO:0003676|GO:0008270
Vifa1g06030 883 Pfam Replication protein A OB domain 378 481 IPR031657 -
Vifa1g06030 883 FunFam Replication protein A subunit 4 117 - -
Vifa1g06030 883 PANTHER REPLICATION FACTOR A 1, RFA1 268 685 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vifa1g06030 883 SUPERFAMILY Nucleic acid-binding proteins 254 368 IPR012340 -
Vifa1g06030 883 CDD RPA1_DBD_A 257 360 - -
Vifa1g06030 883 CDD RPA1N 8 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vifa1g06030 883 MobiDBLite consensus disorder prediction 157 188 - -
Vifa1g06030 883 Gene3D - 831 861 - -
Vifa1g06030 883 Gene3D - 4 116 IPR012340 -
Vifa1g06030 883 Gene3D - 367 505 IPR012340 -
Vifa1g06030 883 FunFam Replication protein A subunit 254 364 - -
Vifa1g06030 883 SUPERFAMILY Nucleic acid-binding proteins 519 696 IPR012340 -
Vifa1g06030 883 FunFam Replication protein A subunit 506 696 - -
Vifa1g06030 883 NCBIfam replication factor-a protein 1 (rpa1) 230 695 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vifa1g06030 883 CDD RPA1_DBD_C 522 695 IPR047192 -
Vifa1g06030 883 Pfam Zinc knuckle 799 814 IPR001878 GO:0003676|GO:0008270
Vifa1g06030 883 Pfam Zinc knuckle 838 853 IPR001878 GO:0003676|GO:0008270
Vifa1g06030 883 SUPERFAMILY Nucleic acid-binding proteins 373 502 IPR012340 -
Vifa1g06030 883 Pfam Replication factor-A C terminal domain 538 689 IPR013955 -
Vifa1g06030 883 Gene3D - 506 696 IPR012340 -
Vifa1g06030 883 Pfam Replication factor-A protein 1, N-terminal domain 5 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vifa1g06030 883 MobiDBLite consensus disorder prediction 214 231 - -
Vifa1g06030 883 MobiDBLite consensus disorder prediction 157 179 - -
Vifa1g06030 883 CDD RPA1_DBD_B 389 496 - -
Vifa1g06030 883 Gene3D - 254 363 IPR012340 -
Vifa1g06030 883 ProSiteProfiles Zinc finger CCHC-type profile. 800 814 IPR001878 GO:0003676|GO:0008270
Vifa1g06030 883 SUPERFAMILY Nucleic acid-binding proteins 1 111 IPR012340 -
Vifa1g06030 883 MobiDBLite consensus disorder prediction 214 244 - -
Vifa1g06030 883 ProSiteProfiles Zinc finger CCHC-type profile. 839 853 IPR001878 GO:0003676|GO:0008270
Vifa1g06030 883 SMART c2hcfinal6 756 772 IPR001878 GO:0003676|GO:0008270
Vifa1g06030 883 SMART c2hcfinal6 799 815 IPR001878 GO:0003676|GO:0008270
Vifa1g06030 883 SMART c2hcfinal6 838 854 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06030 Vifa-Chr1 943738685 943742351 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06030 1 786 Core DNA Replication Machinery Family AT5G45400 49.826 0.0 811
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06030 K07466 - gmx:100778597 1160.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06030 1 943738685 943742351 Vifa1g06030 1 943738685 943742351 ECH