Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g06030 | ATGGCTCTGAGTCTGACACCAGGTGCGATAAAGAAGATGTGTTTCACCTCGTCGGAGGAGGAATTTCAACCGGTGCTGCAACTTATCGATCTGAAACTTGTTCACTCGTCACAGAATACCACTACTGAGAGGTACCGAGCCGTGCTGTCTGATGGCGAGTTTTATGAACAAGGAATGCTCGCTACCCAGAAGAATGGTCTCGTTCATGCTGGAAGGTTGCAAAAAGGTTCCATTGTTAAGCTTACTCAGTTCGTTACTAACGATGTTCAGCGTCGCAAGATTATTATCATTGTTGACCTTGAAGTTCTAATGGACATATGTGACATGATTGGAAAACCTGCCCCAGCACCAAAAGAAGCACCTGCACAAAGTCCTGTTATTCAAACAGGAAATGTACAACCAGCTTTAGGAAACACTGCTGGAAATGCAGCTAGCGTTAATGTTAGACCAAATGTAGCTGTGCCATCTGTGGATCGTTCGAAAGTGAATTCTCCTGCTAGCAGTGTTTATTCTAACAACTCTGAATCTGCACGATATGGTGCATCTTATGCTCCTCCTCCCTCTTATCCTAAACCTGAGCCTGGAGTCAGTGTGATTCGGCCAACAGCTGTCAATGGTTCTTATGGTGAGCAGAATGCAACTTTCCGCAATCCTCAACAACCATTGCAAAATTCTCATGTTCGCCCTCCTCAGCCTATGTACAGACAGCCAACTCCATATGCCAATAGAGGTCCCATGGGAAGAAATGATGCTCCCCCAAGGATAATTCCAATATCTGCATTGAATCCATATCAAAATATGTGGACAATTAAAGCTAGAGTAACTGCTAAGGGAGAACTTAGGCTCTATAACAATGCCCGAGGTGAGGGAAAAGTATTTTCTTTTGATCTTTTGGATTCTGCAGCTGGAGAAATACGGGCCACTTGCTTTAATGCAGTGGCTGATAAGTTCTATAGCCTAATTGAAGTAGGTAAAGTCTATTTGGTTTCTCGGGGAACTTTAAAAGCAGCTCAGAGAAGTTTTAATCACCTTCCTAATGATCAAGAGATAACCCTTGACGCCACATCGGATGTAGTGCCATGCCCTGAAGATGATAACGCAATTCCACAACAAATATATAATTTCCGTTCCATTGGTGACATTGAGAGTATTGAAAGCAACAGTATTGTGGATGTTGTTGCTGTGGTGACTTCTATTAGTCCCACAGCTTCAATCATGAGAAAAAATGGCACCGAAACACAGAAGAGATCTCTCCAGTTGAAAGACATGTCTGGCCGAAGCGTTGAATTAACTATATGGGGAAACTTTTGCAACACTGAAGGACAGAGGCTTCAAAATATTTGTGACTCCGGGGCATTTCCAATTTTAGCTGTAAAATCTGCCAGAGTAAATGATTTCAATGGGAAATCTGTTGGGACCATAGCCACCAGCCAATTAATTGTAGAACCTGATTTTCCAGAGGCTACTACACTGAGAGAATGGTTTGAAAATGAAGGTAGGAATGTCCCAAGTCAATCTATTTCCAAAGATTCATCTTTTGGTAAAAGTGATGTGCGTAAGACTATATCTCAAATTAAGGATGAAAAGTTAGGGACTTCAGAGAAGCCTGACTGGATAACTGTCTGTGCAAGTGTTGCGTACATTAAAGTTGATAATTTTTGCTACACAGCTTGTCCTCTCATGACAGGAGATAGGCAATGTAACAAAAAGGTTACCAACAATGGAGATGGGAAATGGCGCTGTGACAAGTGTGACAAGTCTGTTGATGCTTGTGATTATAGGTACTTGCTGCAAATGCAGATACAGGATCACACTGGCCAAACATGGGTTACTGCTTTCCAGGAGGGTGGGGAGGATATCTTGGGTATATCTGCAAAAGATTTGTATTTTCTGAAATATGAAGAACAAGATGAAGAAAAATTTGCAGAAATCATTCGCAAGGTTGTCTTAACTAGATATATTTTCAAGCTAAAAGTAAAAGAAGAGATGTACAATGATGAACAACGCGTTAAGTCAACGTTAGTAAAAGTAGAGAAGTTAAACTTTGCATCTGATGCTAGATCTCTTCTGGATATGATTGATAAACTTAAGTCTGGAACTGGACTGGGGAGTGTTGAAACTGGACAAGCTGCGCCACCAGTATATACTCCTACAAAGAGTTACACTAATACTGGTAGAGATTATGGGACAGCAAATCAAGTGGGTCGGTATGGAAACCAACCTGACAGTTCTTTTACTTCATCAGGGGCTCCAAATTCTTACATGTCATGTAGTAACTGTGGTGTCTCTGGTCATAGCTCTGCACAATGCTTAAACATTAGAAATCAATCTGGCCAGTCTAATGGAGGGTCCTTTGCCAACAGAGTATCTACTGGATCAGATGGTGCTTCTAGTAATTGCTTTAAATGCAATCAAGCTGGACATTGGGCAAGAGACTGTCCTGGTGTCACTGCTGCACAACCTGATCAGCGTTTGCAGTTCCCATCGGCTGGATCAGGTGGTGCTCCTGGTGAATGTTTTAAATGCCATCAAGCTGGGCATTGGGCAAGAGACTGTCCTGGTATCAGTGCAGCACCTCCATCTCATGGAAACAGCAATGCAGTGCAAGGAAGATATGGCATTGCTCAAAATCAGCAGTATGGAAGATATTGA | 2652 | 0.4223 | MALSLTPGAIKKMCFTSSEEEFQPVLQLIDLKLVHSSQNTTTERYRAVLSDGEFYEQGMLATQKNGLVHAGRLQKGSIVKLTQFVTNDVQRRKIIIIVDLEVLMDICDMIGKPAPAPKEAPAQSPVIQTGNVQPALGNTAGNAASVNVRPNVAVPSVDRSKVNSPASSVYSNNSESARYGASYAPPPSYPKPEPGVSVIRPTAVNGSYGEQNATFRNPQQPLQNSHVRPPQPMYRQPTPYANRGPMGRNDAPPRIIPISALNPYQNMWTIKARVTAKGELRLYNNARGEGKVFSFDLLDSAAGEIRATCFNAVADKFYSLIEVGKVYLVSRGTLKAAQRSFNHLPNDQEITLDATSDVVPCPEDDNAIPQQIYNFRSIGDIESIESNSIVDVVAVVTSISPTASIMRKNGTETQKRSLQLKDMSGRSVELTIWGNFCNTEGQRLQNICDSGAFPILAVKSARVNDFNGKSVGTIATSQLIVEPDFPEATTLREWFENEGRNVPSQSISKDSSFGKSDVRKTISQIKDEKLGTSEKPDWITVCASVAYIKVDNFCYTACPLMTGDRQCNKKVTNNGDGKWRCDKCDKSVDACDYRYLLQMQIQDHTGQTWVTAFQEGGEDILGISAKDLYFLKYEEQDEEKFAEIIRKVVLTRYIFKLKVKEEMYNDEQRVKSTLVKVEKLNFASDARSLLDMIDKLKSGTGLGSVETGQAAPPVYTPTKSYTNTGRDYGTANQVGRYGNQPDSSFTSSGAPNSYMSCSNCGVSGHSSAQCLNIRNQSGQSNGGSFANRVSTGSDGASSNCFKCNQAGHWARDCPGVTAAQPDQRLQFPSAGSGGAPGECFKCHQAGHWARDCPGISAAPPSHGNSNAVQGRYGIAQNQQYGRY | 883 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g06030 | 883 | Pfam | OB-fold nucleic acid binding domain | 268 | 355 | IPR004365 | GO:0003676 | |
Vifa1g06030 | 883 | FunFam | Replication protein A subunit | 367 | 505 | - | - | |
Vifa1g06030 | 883 | Gene3D | - | 752 | 826 | - | - | |
Vifa1g06030 | 883 | SUPERFAMILY | Retrovirus zinc finger-like domains | 791 | 854 | IPR036875 | GO:0003676|GO:0008270 | |
Vifa1g06030 | 883 | Pfam | Replication protein A OB domain | 378 | 481 | IPR031657 | - | |
Vifa1g06030 | 883 | FunFam | Replication protein A subunit | 4 | 117 | - | - | |
Vifa1g06030 | 883 | PANTHER | REPLICATION FACTOR A 1, RFA1 | 268 | 685 | IPR004591 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
Vifa1g06030 | 883 | SUPERFAMILY | Nucleic acid-binding proteins | 254 | 368 | IPR012340 | - | |
Vifa1g06030 | 883 | CDD | RPA1_DBD_A | 257 | 360 | - | - | |
Vifa1g06030 | 883 | CDD | RPA1N | 8 | 103 | IPR007199 | GO:0003677|GO:0005634|GO:0006260 | |
Vifa1g06030 | 883 | MobiDBLite | consensus disorder prediction | 157 | 188 | - | - | |
Vifa1g06030 | 883 | Gene3D | - | 831 | 861 | - | - | |
Vifa1g06030 | 883 | Gene3D | - | 4 | 116 | IPR012340 | - | |
Vifa1g06030 | 883 | Gene3D | - | 367 | 505 | IPR012340 | - | |
Vifa1g06030 | 883 | FunFam | Replication protein A subunit | 254 | 364 | - | - | |
Vifa1g06030 | 883 | SUPERFAMILY | Nucleic acid-binding proteins | 519 | 696 | IPR012340 | - | |
Vifa1g06030 | 883 | FunFam | Replication protein A subunit | 506 | 696 | - | - | |
Vifa1g06030 | 883 | NCBIfam | replication factor-a protein 1 (rpa1) | 230 | 695 | IPR004591 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
Vifa1g06030 | 883 | CDD | RPA1_DBD_C | 522 | 695 | IPR047192 | - | |
Vifa1g06030 | 883 | Pfam | Zinc knuckle | 799 | 814 | IPR001878 | GO:0003676|GO:0008270 | |
Vifa1g06030 | 883 | Pfam | Zinc knuckle | 838 | 853 | IPR001878 | GO:0003676|GO:0008270 | |
Vifa1g06030 | 883 | SUPERFAMILY | Nucleic acid-binding proteins | 373 | 502 | IPR012340 | - | |
Vifa1g06030 | 883 | Pfam | Replication factor-A C terminal domain | 538 | 689 | IPR013955 | - | |
Vifa1g06030 | 883 | Gene3D | - | 506 | 696 | IPR012340 | - | |
Vifa1g06030 | 883 | Pfam | Replication factor-A protein 1, N-terminal domain | 5 | 104 | IPR007199 | GO:0003677|GO:0005634|GO:0006260 | |
Vifa1g06030 | 883 | MobiDBLite | consensus disorder prediction | 214 | 231 | - | - | |
Vifa1g06030 | 883 | MobiDBLite | consensus disorder prediction | 157 | 179 | - | - | |
Vifa1g06030 | 883 | CDD | RPA1_DBD_B | 389 | 496 | - | - | |
Vifa1g06030 | 883 | Gene3D | - | 254 | 363 | IPR012340 | - | |
Vifa1g06030 | 883 | ProSiteProfiles | Zinc finger CCHC-type profile. | 800 | 814 | IPR001878 | GO:0003676|GO:0008270 | |
Vifa1g06030 | 883 | SUPERFAMILY | Nucleic acid-binding proteins | 1 | 111 | IPR012340 | - | |
Vifa1g06030 | 883 | MobiDBLite | consensus disorder prediction | 214 | 244 | - | - | |
Vifa1g06030 | 883 | ProSiteProfiles | Zinc finger CCHC-type profile. | 839 | 853 | IPR001878 | GO:0003676|GO:0008270 | |
Vifa1g06030 | 883 | SMART | c2hcfinal6 | 756 | 772 | IPR001878 | GO:0003676|GO:0008270 | |
Vifa1g06030 | 883 | SMART | c2hcfinal6 | 799 | 815 | IPR001878 | GO:0003676|GO:0008270 | |
Vifa1g06030 | 883 | SMART | c2hcfinal6 | 838 | 854 | IPR001878 | GO:0003676|GO:0008270 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g06030 | Vifa-Chr1 | 943738685 | 943742351 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g06030 | 1 | 786 | Core DNA Replication Machinery Family | AT5G45400 | 49.826 | 0.0 | 811 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g06030 | K07466 | - | gmx:100778597 | 1160.21 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa1g06030 | 1 | 943738685 | 943742351 | Vifa1g06030 | 1 | 943738685 | 943742351 | ECH |