Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06023 ATGGAGAGGTACAAAATAATTAAGGAAGTTGGTGATGGAACATTTGGGAGTGTCTGGAGAGCTATTAGTAAGCAAGCTGGCGAAGTTGTTGCAATCAAAAAAATGAAAAAGAAATATTACTCTTGGGAAGAGTGTGTAAATCTCAGAGAAGTCAAGTCTTTACGAAAAATGAACCACCCAAATATTGTGAAACTGAAGGAAGTTATTCGAGAAAGTGACATTCTGTACTTTGTTTTTGAGTACATGGAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAATTGTTTTCTGAAAGTGAAATTAGAAACTGGTGTTTTCAAGTTTTCCAAGGTCTGGCTTACATGCATCAGCGTGGTTACTTCCATCGCGACCTTAAACCTGAAAATTTGCTGGTTTCCAAGGATATTATCAAAATTGCTGATTTTGGCCTAGCCCGAGAGATCGATTCACAACCACCCTACACTGAGTATGTCTCCACAAGATGGTATCGTGCTCCTGAAGTGCTGCTTCAGTCTTATATATATAACGCCAAAGTTGACATGTGGGCAATGGGTGCTATAATGGCTGAGCTGTTCTCTCTACGACCTCTTTTTCCAGGAGCCAGTGAGGCAGATGAGATCTACAAAATATGTGGTGTGATAGGCAGTCCAACCACTGAATCATGGACAGATGGACTCAAACTTGCAAGAGATATTAATTATCAGTTTCCACAGCTTGCTGGCATAAACCTTTCTGCATTGATCCCATCTGCAAGTAATCATGCAATCAGCCTTATCCAATCACTTTGTTCCTGGGATCCCTGCAAGAGGCCAACAGCTTCAGAGGCCCTTCAACATCCTTTCTTCCAGAGTTGCTTTTACATTCCTCCATCCCTTCGCTCCAGAGCAATAGCGAGAACCCCTCCACCTGGAATTAGGGGATCACTGGATCAGCAAGGGGTCAAGAGATATCCCGGTGCTTTACCCAACTCAAAGCTCACCAACTATTTTCCATCTCCAAAGTTACAGCCTTCTTCAGGTGTGCAACGGAAGCTGGATATGGATGACAAGAATGGCATTAAGAATGATAAATCAATGCAGACTACTACACAATCGAAGTATCGACAACCAGGAAAGGACAATCAAACTTCTATAAACAAAGGAAGATCTACACGAGGTGTTTTAGAAACAGCTGAGAGGTTGGCCAATATGTCTATTGGCGCTCGAAGGCAGTCCATGGAGCAGCCCCGTGCTCCTCCCATGAAGCCTGGAGAATCTCCTAACTTCATGCTCAGGCCTGCACCACATATCTCAACTGGGAGAACGTATCCTAGAAAAGTAGCTGGATGA 1332 0.4309 MERYKIIKEVGDGTFGSVWRAISKQAGEVVAIKKMKKKYYSWEECVNLREVKSLRKMNHPNIVKLKEVIRESDILYFVFEYMECNLYQLMKDREKLFSESEIRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVSKDIIKIADFGLAREIDSQPPYTEYVSTRWYRAPEVLLQSYIYNAKVDMWAMGAIMAELFSLRPLFPGASEADEIYKICGVIGSPTTESWTDGLKLARDINYQFPQLAGINLSALIPSASNHAISLIQSLCSWDPCKRPTASEALQHPFFQSCFYIPPSLRSRAIARTPPPGIRGSLDQQGVKRYPGALPNSKLTNYFPSPKLQPSSGVQRKLDMDDKNGIKNDKSMQTTTQSKYRQPGKDNQTSINKGRSTRGVLETAERLANMSIGARRQSMEQPRAPPMKPGESPNFMLRPAPHISTGRTYPRKVAG 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06023 443 FunFam serine/threonine-protein kinase MAK isoform X1 84 293 - -
Vifa1g06023 443 MobiDBLite consensus disorder prediction 402 443 - -
Vifa1g06023 443 Pfam Protein kinase domain 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06023 443 FunFam cyclin-dependent kinase F-4-like 1 83 - -
Vifa1g06023 443 ProSitePatterns Protein kinases ATP-binding region signature. 10 34 IPR017441 GO:0005524
Vifa1g06023 443 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Vifa1g06023 443 SMART serkin_6 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06023 443 MobiDBLite consensus disorder prediction 326 340 - -
Vifa1g06023 443 Gene3D Transferase(Phosphotransferase) domain 1 84 288 - -
Vifa1g06023 443 CDD STKc_MAK_like 4 283 - -
Vifa1g06023 443 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 3 351 - -
Vifa1g06023 443 MobiDBLite consensus disorder prediction 298 385 - -
Vifa1g06023 443 SUPERFAMILY Protein kinase-like (PK-like) 1 287 IPR011009 -
Vifa1g06023 443 MobiDBLite consensus disorder prediction 357 385 - -
Vifa1g06023 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Vifa1g06023 443 ProSiteProfiles Protein kinase domain profile. 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06023 Vifa-Chr1 941302017 941306824 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06023 1 290 Core Cell Cycle Gene Families AT3G48750 37.248 1.94e-65 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Vifa1g06023 Pkinase 1.3e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06023 K08829 - gmx:100810150 757.288