Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06022 ATGGAGAGGTACAAAATAATTAAGGAAGTTGGTGATGGAACATTTGGGAGTGTCTGGAGAGCTATTAGTAAGCAAGCTGGCGAAGTTGTTGCAATCAAAAAAATGAAAAAGAAATATTACTCTTGGGAAGAGTGTGTAAATCTCAGAGAAGTCAAGTCTTTACGAAAAATGAACCACCCAAATATTGTGAAACTGAAGGAAGTTATTCGAGAAAGTGACATTCTGTACTTTGTTTTTGAGTACATGGAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAATTGTTTTCTGAAAGTGAAATTAGAAACTGGTGTTTTCAAGTTTTCCAAGGTCTGGCTTACATGCATCAGCGTGGTTACTTCCATCGCGACCTTAAACCTGAAAATTTGCTGGTTTCCAAGGATATTATCAAAATTGCTGATTTTGGCCTAGCCCGAGAGATCGATTCACAACCACCCTACACTGAGTATGTCTCCACAAGATGGTATCGTGCTCCTGAAGTGCTGCTTCAGTCTTATATATATAACGCCAAAGTTGACATGTGGGCAATGGGTGCTATAATGGCTGAGCTGTTCTCTCTACGACCTCTTTTTCCAGGAGCCAGTGAGGCAGATGAGATCTACAAAATATGTGGTGTGATAGGCAGTCCAACCACTGAATCATGGACAGATGGACTCAAACTTGCAAGAGATATTAATTATCAGTTTCCACAGCTTGCTGGCATAAACCTTTCTGCATTGATCCCATCTGCAAGTAATCATGCAATCAGCCTTATCCAATCACTTTGTTCCTGGGATCCCTGCAAGAGGCCAACAGCTTCAGAGGCCCTTCAACATCCTTTCTTCCAGAGTTGCTTTTACATTCCTCCATCCCTTCGCTCCAGAGCAATAGCGAGAACCCCTCCACCTGGAATTAGGGGATCACTGGATCAGCAAGGGGTCAAGAGATATCCCGGTGCTTTACCCAACTCAAAGCTCACCAACTATTTTCCATCTCCAAAGTTACAGCCTTCTTCAGGTGTGCAACGGAAGCTGGATATGGTAAATCAGGATGACAAGAATGGCATTAAGAATGATAAATCAATGCAGACTACTACACAATCGAAGTATCGACAACCAGGAAAGGACAATCAAACTTCTATAAACAAAGGAAGATCTACACGAGGTGTTTTAGAAACAGCTGAGAGGTTGGCCAATATGTCTATTGGCGCTCGAAGGCAGTCCATGGAGCAGCCCCGTGCTCCTCCCATGAAGCCTGGAGAATCTCCTAACTTCATGCTCAGGCCTGCACCACATATCTCAACTGGGAGAACGTATCCTAGAAAAGTAGCTGGATGA 1341 0.4303 MERYKIIKEVGDGTFGSVWRAISKQAGEVVAIKKMKKKYYSWEECVNLREVKSLRKMNHPNIVKLKEVIRESDILYFVFEYMECNLYQLMKDREKLFSESEIRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVSKDIIKIADFGLAREIDSQPPYTEYVSTRWYRAPEVLLQSYIYNAKVDMWAMGAIMAELFSLRPLFPGASEADEIYKICGVIGSPTTESWTDGLKLARDINYQFPQLAGINLSALIPSASNHAISLIQSLCSWDPCKRPTASEALQHPFFQSCFYIPPSLRSRAIARTPPPGIRGSLDQQGVKRYPGALPNSKLTNYFPSPKLQPSSGVQRKLDMVNQDDKNGIKNDKSMQTTTQSKYRQPGKDNQTSINKGRSTRGVLETAERLANMSIGARRQSMEQPRAPPMKPGESPNFMLRPAPHISTGRTYPRKVAG 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06022 446 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Vifa1g06022 446 FunFam cyclin-dependent kinase F-4-like 1 83 - -
Vifa1g06022 446 FunFam serine/threonine-protein kinase MAK isoform X1 84 293 - -
Vifa1g06022 446 MobiDBLite consensus disorder prediction 404 446 - -
Vifa1g06022 446 MobiDBLite consensus disorder prediction 298 388 - -
Vifa1g06022 446 Pfam Protein kinase domain 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06022 446 ProSitePatterns Protein kinases ATP-binding region signature. 10 34 IPR017441 GO:0005524
Vifa1g06022 446 SMART serkin_6 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06022 446 SUPERFAMILY Protein kinase-like (PK-like) 1 287 IPR011009 -
Vifa1g06022 446 CDD STKc_MAK_like 4 283 - -
Vifa1g06022 446 MobiDBLite consensus disorder prediction 326 346 - -
Vifa1g06022 446 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 3 352 - -
Vifa1g06022 446 MobiDBLite consensus disorder prediction 360 388 - -
Vifa1g06022 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Vifa1g06022 446 Gene3D Transferase(Phosphotransferase) domain 1 84 288 - -
Vifa1g06022 446 ProSiteProfiles Protein kinase domain profile. 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06022 Vifa-Chr1 941302017 941306824 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06022 1 290 Core Cell Cycle Gene Families AT3G48750 37.248 1.79e-65 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Vifa1g06022 Pkinase 1.3e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06022 K08829 - gmx:100810150 759.985