Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06020 ATGTCAAGAGGAGACAAACCTGAACAACAACAAGAAGATTCTTTTGCAGTTTGTGAAGGAGTAAAGATGTTTGAATGCATAACATGTAATAGGAAGCAGACGGCGGAAGATAGGGATGATGAAGAGGTCGGTCAGAGTGGCACGCCGGGCAGTAAACAAGCCGTCAAAAGCCTGACTGCGCAGATAAAAGATATAGTACTGAAGTTCACAGGTGCTTCCTGCAAACGATCCGGCTCCTATAGAAAAGGACTGAGATCTTCGACAAACTTTGTAGAGAGCTCGGAAGGGGTTCGATACCCTTATATGGGAGGTGTAACCTCAGGTTCTACTCCTCCTTGGGAGTTAGGTGTCAATTACAGTAATGGCAACCAAAGTCCTAGAGTACAAGAGGCAGTTGTGGCAGCGGCTCAAGTAGTGGTGGAGGAAGAGATTGGAAACAAAGTGTGGGTGGCACAAGTGGAGCCGGGGGTTGATGTTACCTTTGTGTCTCTTCCTGATGGTGGAAATGATCTTAAAAGAATTCGATTCAACCGAGAAATGTTTGATAAATGGCAAGCTCAAGTATGGTGGGGAGAGAATTATGACAGAATCCGGGAGCTATATAATGTCCAGAGATTTAATCGTCAAGCTCTCAACACTCCCCCGCCATCCGAGGATGAGCAAAGAGAGTCTTCTGACCCAAGGCATCACCAAACTGTAAGAAATAGCCCTGTGGCTGCATGGTTGAACAATGATTCAATGCTAAGGAATCAGTACTGTAGTCCTTCAGGTTTCACAATGAGTCAAGGAAGCAGTAGCAACCGACAAATGCATGAAGCAGGGTCATCCATGGAAGCATCAAGAGCCTCTTCTAGAGATGAGCTTTTCTTCAGCAATGCCGTTGGAGTTGAGTCAGAATGGGTTGAGCAAGTTGAGCCTGGTGTGTTTGTTACTATCAGACGGTTACCTGATGGAAACAAGGAGCTTCGTCGTGTCAGATTCAGCCGACAGAGGTTTGGAGATGAAGATGCAAGGAAATGGTGGGAAGAGAACAGAGAAAGAGTTCAAGTTCAATACATATGA 1062 0.4567 MSRGDKPEQQQEDSFAVCEGVKMFECITCNRKQTAEDRDDEEVGQSGTPGSKQAVKSLTAQIKDIVLKFTGASCKRSGSYRKGLRSSTNFVESSEGVRYPYMGGVTSGSTPPWELGVNYSNGNQSPRVQEAVVAAAQVVVEEEIGNKVWVAQVEPGVDVTFVSLPDGGNDLKRIRFNREMFDKWQAQVWWGENYDRIRELYNVQRFNRQALNTPPPSEDEQRESSDPRHHQTVRNSPVAAWLNNDSMLRNQYCSPSGFTMSQGSSSNRQMHEAGSSMEASRASSRDELFFSNAVGVESEWVEQVEPGVFVTIRRLPDGNKELRRVRFSRQRFGDEDARKWWEENRERVQVQYI 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06020 353 MobiDBLite consensus disorder prediction 253 282 - -
Vifa1g06020 353 Pfam Transcription factor BRX N-terminal domain 48 74 IPR027988 -
Vifa1g06020 353 MobiDBLite consensus disorder prediction 208 240 - -
Vifa1g06020 353 Pfam Transcription factor regulating root and shoot growth via Pin3 148 201 IPR013591 -
Vifa1g06020 353 Pfam Transcription factor regulating root and shoot growth via Pin3 297 352 IPR013591 -
Vifa1g06020 353 ProSiteProfiles BRX domain profile. 147 202 IPR013591 -
Vifa1g06020 353 PANTHER PROTEIN BREVIS RADIX-LIKE 1 23 353 IPR044532 -
Vifa1g06020 353 ProSiteProfiles BRX domain profile. 298 353 IPR013591 -
Vifa1g06020 353 MobiDBLite consensus disorder prediction 34 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06020 Vifa-Chr1 941161291 941165072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06020 22 353 Major Intrinsic Protein MIP AT1G31880 47.765 6.67e-99 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06020 - - mtr:11415593 404.06