Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06015 ATGAGCATTCCACCACCGCCGCCGCAGATGTGGCCACCGTCTCATCCACCGTTCACAGTATCACAGTGGCAAGAGCTAGAACACCAAGCTCTCATCTTCAAGTATCTCAAAGCTGGTTTGTCGGTTCCTCCCGACCTCCTTTTACCTATTCGGAAAAGTCTTCAATTGATGTCTCACCCATCTCTGGGTTATTATGGGAAGAAAATTGACCCAGAACCAGGTAGGTGTAGAAGAACCGATGGAAAAAAATGGAGATGTTCTAGGGATGCTCATCCTGATTCTAAGTACTGTGACCGTCATATGATACGACGTCGTTACCGTTCAAGAAAGCCTGTGGAATCTTCTTCTTCTCAATCTCAATCTTCATCTTCACTTTCTTCTACTTCACAGCAACTTGCTCCTTCTATTGGAGTTGCTGCTACTGTTTCTGCCTCTGATACTTCAACTTTCCATACACTTCCTTTGCATACAAATGGTACTCGTGAAAGTTTAGGTTTCACTCTTGGGAACACCATGCCCCACATGGACCCCATGCTTCTTCCTCTTCAGGGCTCTAAGAAACCTTATAGGTTTGGACTGAACTCGGAAGCAGAGGAGCACAACCTCTTACAGAAAGATCTCGGAACTGTCAAGTATCAAGGCTACGACTTTACATCAGATGGCATGTGGTATAACAACATGTCTCAGATTCCATCGAACACAGTTTCAGAATCAAGGAGCAATTCTTCCATGGTTAACAACAGCAACTACTTCCAACAACAGCGAACAACACGAGAGCCTGAGCTGATGTTTAGCCTCGACGCTGCAAGGTCCAAGGAAATCGTCTTTAACGGCCAGTTAGGTAGCTTGAAACAGGACTATCAATCATCCCCCCAGTCTCTCTTCAACGACTGGCAGTGGAAGAAAGATTTAGCCTCCTCTGCCATGGAGTATAGACCAAGCAAGGATTTTAACACCAACCCAGATATCAATGCCGATTCAAATGCTACTCTATGA 996 0.4528 MSIPPPPPQMWPPSHPPFTVSQWQELEHQALIFKYLKAGLSVPPDLLLPIRKSLQLMSHPSLGYYGKKIDPEPGRCRRTDGKKWRCSRDAHPDSKYCDRHMIRRRYRSRKPVESSSSQSQSSSSLSSTSQQLAPSIGVAATVSASDTSTFHTLPLHTNGTRESLGFTLGNTMPHMDPMLLPLQGSKKPYRFGLNSEAEEHNLLQKDLGTVKYQGYDFTSDGMWYNNMSQIPSNTVSESRSNSSMVNNSNYFQQQRTTREPELMFSLDAARSKEIVFNGQLGSLKQDYQSSPQSLFNDWQWKKDLASSAMEYRPSKDFNTNPDINADSNATL 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06015 331 Pfam QLQ 17 51 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vifa1g06015 331 ProSiteProfiles WRC domain profile. 70 114 IPR014977 -
Vifa1g06015 331 MobiDBLite consensus disorder prediction 112 130 - -
Vifa1g06015 331 MobiDBLite consensus disorder prediction 70 130 - -
Vifa1g06015 331 Pfam WRC 71 113 IPR014977 -
Vifa1g06015 331 MobiDBLite consensus disorder prediction 312 331 - -
Vifa1g06015 331 ProSiteProfiles QLQ domain profile. 17 52 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vifa1g06015 331 PANTHER GROWTH-REGULATING FACTOR 5 16 305 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vifa1g06015 331 SMART QLQ_2 16 52 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vifa1g06015 331 MobiDBLite consensus disorder prediction 70 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06015 Vifa-Chr1 940274583 940276650 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06015 16 113 GRF Transcription Factor Family AT3G13960 59.091 5.94e-40 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vifa1g06015 WRC 2.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06015 - - gmx:100809947 404.831