Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06014 ATGGCTCTTGGTGGCTTGATTCTTAGCAAAGCAGCAGATTACATTGTTGAAAAACCGGAAGTGTATCTTGTTAAAGCAATATGCAAAGCCGAGAAACTCGATCTAGAAGAGGTTTCTAAAGAACTTGTGACTAAGAAAAGCAAATACAAGTTTCTGCTTTCAATATCCACTTTTGTTGTACTCATGATTACAGGAACTGTTTTTCTGTATTTTGTTGAGAAACTAGATTTCGTCGATGCATTCTATTGTGTTTGTTCGACGGTTACGACTTTAGGTTACGGAGATAAGAGCTTCTCAAATCCTATTAGTAGTACTTTTGCAACTGATCTTGATGGAGACAAAGCTGTCAGTGCTGTAGAGTTTGTTTTGTACAAGTTGAAGGAAATGGGAAAGATCAACCAAGAAGATGTTATGGCCGTGATGGAGATTTTTAGAAAACTAGATTATGATCAATCAGGAACTCTGACTGAAGCTGATTTCAGAAACTCTCAAAGGAAGGACAATTTTTCTGGTGCCATTCCTAAAGAACTTGGAGATCTAGACAATCTGGAGTTGTTGGATTTAAGGGAGAATAACTTGATTGGAAATATCCCCGCAGAAACCGGGAGGATATTGTTAAAACAATTATTGGTTCATGACAATAAATTTGAAGGTAGCGATTCTCAAGAGCTCGACAACATGGGACTGCCTTCTAAATCGCTAGTTATTGACAACTATTCGTCTCCCCTGGCAAGTTTGTTTCAGTGCAAGAATAGAAAGTTTGCACACTGGTAA 774 0.3798 MALGGLILSKAADYIVEKPEVYLVKAICKAEKLDLEEVSKELVTKKSKYKFLLSISTFVVLMITGTVFLYFVEKLDFVDAFYCVCSTVTTLGYGDKSFSNPISSTFATDLDGDKAVSAVEFVLYKLKEMGKINQEDVMAVMEIFRKLDYDQSGTLTEADFRNSQRKDNFSGAIPKELGDLDNLELLDLRENNLIGNIPAETGRILLKQLLVHDNKFEGSDSQELDNMGLPSKSLVIDNYSSPLASLFQCKNRKFAHW 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06014 257 Gene3D Ribonuclease Inhibitor 168 225 IPR032675 -
Vifa1g06014 257 SUPERFAMILY L domain-like 168 227 - -
Vifa1g06014 257 Gene3D - 31 109 - -
Vifa1g06014 257 SUPERFAMILY EF-hand 108 168 IPR011992 -
Vifa1g06014 257 ProSitePatterns EF-hand calcium-binding domain. 148 160 IPR018247 -
Vifa1g06014 257 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 3 103 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vifa1g06014 257 Pfam Ion channel 58 101 IPR013099 -
Vifa1g06014 257 ProSiteProfiles EF-hand calcium-binding domain profile. 135 170 IPR002048 GO:0005509
Vifa1g06014 257 Gene3D - 110 163 - -
Vifa1g06014 257 SUPERFAMILY Voltage-gated potassium channels 44 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06014 Vifa-Chr1 940174425 940175849 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06014 1 164 Ion Channels AT5G55630 40.952 9.07e-43 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06014 K05389 - gmx:100799492 212.616