Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06011 ATGAATTGTGAAAGATTTGACATGACTGTTTTGATTGTGGATCATGATGCTGTTTCTTTGGCTGCAATTGCCAATTTACTCATGGCATGGCAATACAAAGTTCAAACTGCCAATGATGCTCATCAAGCTTTGACAATTCTCCAAGGATCAAAATGCTTATTTGATATCATAATTTCAGAGTTCAATTTATTAGGAATGAGTGGCTATGATTTTCTAAAGCTAATTCAATATGAATTTCATATACCTGTAATAATGATGTCTGAAGAAAAGGAAGAAAGCTTAATCTTCAATATTTTAAAAAGTGGAGCAGCACATTTTATTGCAAAACCTTTTTGTGATGAAGACTTCAAAAACATTGAGAAATATGTTATGGAAGCAAAAGAAGAAAAACTATTCTTTGAAAGCCTATTTGTAACAAAAGAAGGTGAAGAACAAAAGAGTAAAAATAAGCAATCCAAGAGAAAGATAAATGATAAAAAACAAGAAGGAGGTTTTCAAGTTTCTAAGAAATCAAAGCTTGTTTGGACTCCTGAACTTCATAATCTATTTATGTTTGCAATTAAGCAAATTGGATTGGAAAGTACTAAGGTTGTCCCAAAGAAAATTCAAAGGATTATGAATGTCCCATACTTGACCAGGGAAAATGTAGCTAGCCACTTACAGAAATATCGCAAATTTCTGCGTGATGTCAATGAGAAAGGAATTACCGGAGGAATGTCACAAAGAGCTTTAAGGTCTACATTCGCATTAAGTCTTCCTATGCCATTGTTAAGAACTATGCAAGAAAAAAGTAGAAACAAATTTCACACCCCAACTTTTGAATATTCTCAAACATTATCATATCCAACCGAAAATCAAGACAATGATTTTAACCTTTTCAATAGATTTCCATCGCACCAAGTTGATAATTTCCCTTATGTGCAACAAGGGCCAAATCTTCGATATTTAGATCAAATTCGTCTTGAAAACTCAAATTTGGAAAAAAATGGTGGCTTCAACAATAATATCTATGATCAAAATTTGATCGGAATAAACTCTTCGGATAGTTCATTTTATCCGGAAAAAAATCTATTATATGATGGTGGTTTTAGTTCTAGTAGTTTTTCGTCTTATGGAGGTGGACAAGGATGGACAACTTGTGCTACAACTTCTTCTTCAAGAATCTTAACAAGAGACTTGAACTTTAATGATATGAATCTTACTAATAAGTCATCCAAAGGTGGTGATGAAATTGAAATCCCTCCTCAAGCTGAAATCACATCATGTGTGATGAATGAGTCACCTATAAGTTCGAACAAAAGTTCTAAAAAGTTGCAAGGGAATAAGGGATTTTTAAATGAGAGATCATGTGATAGATTCACAGGGGACAAAGATTCTAAAGAAGGAGTCACAACTAATGATAAGGAATTTGATATGGATATTGTTGAAGCCTTGTTTGGTATTATAAAAGACTAG 1455 0.3278 MNCERFDMTVLIVDHDAVSLAAIANLLMAWQYKVQTANDAHQALTILQGSKCLFDIIISEFNLLGMSGYDFLKLIQYEFHIPVIMMSEEKEESLIFNILKSGAAHFIAKPFCDEDFKNIEKYVMEAKEEKLFFESLFVTKEGEEQKSKNKQSKRKINDKKQEGGFQVSKKSKLVWTPELHNLFMFAIKQIGLESTKVVPKKIQRIMNVPYLTRENVASHLQKYRKFLRDVNEKGITGGMSQRALRSTFALSLPMPLLRTMQEKSRNKFHTPTFEYSQTLSYPTENQDNDFNLFNRFPSHQVDNFPYVQQGPNLRYLDQIRLENSNLEKNGGFNNNIYDQNLIGINSSDSSFYPEKNLLYDGGFSSSSFSSYGGGQGWTTCATTSSSRILTRDLNFNDMNLTNKSSKGGDEIEIPPQAEITSCVMNESPISSNKSSKKLQGNKGFLNERSCDRFTGDKDSKEGVTTNDKEFDMDIVEALFGIIKD 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06011 484 ProSiteProfiles Response regulatory domain profile. 9 124 IPR001789 GO:0000160
Vifa1g06011 484 Pfam Response regulator receiver domain 10 116 IPR001789 GO:0000160
Vifa1g06011 484 SUPERFAMILY Homeodomain-like 168 229 IPR009057 -
Vifa1g06011 484 MobiDBLite consensus disorder prediction 144 163 - -
Vifa1g06011 484 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 303 IPR045279 GO:0009736
Vifa1g06011 484 NCBIfam myb-like DNA-binding domain, SHAQKYF class 170 225 IPR006447 GO:0003677
Vifa1g06011 484 SUPERFAMILY CheY-like 7 125 IPR011006 -
Vifa1g06011 484 SMART REC_2 8 120 IPR001789 GO:0000160
Vifa1g06011 484 FunFam Two-component response regulator 166 231 - -
Vifa1g06011 484 Coils Coil 142 162 - -
Vifa1g06011 484 Gene3D - 167 229 - -
Vifa1g06011 484 Gene3D - 8 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06011 Vifa-Chr1 939877536 939881055 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06011 8 235 Response Regulator Gene Family AT4G31920 36.481 2.24e-37 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa1g06011 Response_reg 1.4e-18 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06011 - K14491 psat:127115544 584.719