Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05988 ATGATGGAGAGTGGTGAGAGAGGAGGAAGAGAAGATTATGATGGAGTGATGATGACGATGACAAGAGACCCGAAGCCGAGGCTGAGGTGGACAGCCGATCTTCACGACCGGTTTGTCGATGCTGTCACAAAGCTTGGTGGCCCTGATAAGGCAACTCCAAAGGCTGTTCTAAGGTTAATGGGCTTGAAAGGTTTGACATTATATCATTTGAAGAGCCATTTACAGAAGTATAGACTTGGACAAAATGGTCGAAAACAATATGAAGAACAATACAAAGAGAATAACAGGTGTTCCTATGTAAATTTCAGTGACCATTCTTCTCAGACTAATACAAGTTATGGAGGTGATAATGAAGAGGGAGAAATTCCAATAGCTGAAGCACTTAGACAACAAATTGAAGTTCAAAAGAGATTAGAAGAGCAGTTTGAGGTACAAAAGAAATTGCAAATGAGAATAGAGGCTCAAGAGAAGTATTTTCAGACAGTGCTAGAGAAAGCACAAACAAGTCTTTCACAAGATGGACAAAGCAACCTTCAATTCAACTCAGCTTTATCAAGTTTCATGGAAAATATGACCAAAGATAGTAAAGAAAACATAATAGACATGAATGAGTTTTATAACAAGAACCATAGTTCAGTTTTCAATTATCAAGAGGTACTAGGAGCAGAAGAAAACAAAGAAGTAAAGCCTCAAGTTGAAGGGGATTCAATTCACTTAGACTTAAACATCAAAGGTGGCAATGAACTTTTATGTGCAGATGGAGCTGAAATGGAATCAAAGATGGTTTCATATAGGGTATTCCAATTTTGA 810 0.379 MMESGERGGREDYDGVMMTMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKAVLRLMGLKGLTLYHLKSHLQKYRLGQNGRKQYEEQYKENNRCSYVNFSDHSSQTNTSYGGDNEEGEIPIAEALRQQIEVQKRLEEQFEVQKKLQMRIEAQEKYFQTVLEKAQTSLSQDGQSNLQFNSALSSFMENMTKDSKENIIDMNEFYNKNHSSVFNYQEVLGAEENKEVKPQVEGDSIHLDLNIKGGNELLCADGAEMESKMVSYRVFQF 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05988 269 Coils Coil 125 145 - -
Vifa1g05988 269 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 14 198 IPR044848 GO:0003700
Vifa1g05988 269 Gene3D - 24 82 - -
Vifa1g05988 269 FunFam Myb family transcription factor 24 82 - -
Vifa1g05988 269 Pfam Myb-like DNA-binding domain 28 78 IPR001005 -
Vifa1g05988 269 Pfam MYB-CC type transfactor, LHEQLE motif 123 168 IPR025756 -
Vifa1g05988 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 82 IPR017930 -
Vifa1g05988 269 SUPERFAMILY Homeodomain-like 25 82 IPR009057 -
Vifa1g05988 269 NCBIfam myb-like DNA-binding domain, SHAQKYF class 25 80 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05988 Vifa-Chr1 937096413 937098210 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05988 18 166 G2-like Transcription Factor Family AT4G13640 53.947 2.85e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa1g05988 Myb_DNA-binding 1.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05988 - - mtr:11409568 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05988 1 937096413 937098210 Vifa1g05988 1 937096413 937098210 ECH