Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05985 ATGGAAATTCACAAAAACACAAACAAGAAATGGAGAGGTTCCAAAAAGGAATCAAAATGGAAGAAAATGATTTTCTTCAACACTTCAAAAACTACCCAAAATCCACCTCAAGAATTTCTCTGCCCCATTTCTGGATCTCTCATGTCTGACCCTGTAATTGTCTCCTCCGGCCATTCCTTCGACCGAACCTCAATCCAAGCCTGTACAAATCTCAACTTTACCCCTCAACTCCAAGATGGCACCACCCCCAATTTCACAACCCTAATCCCAAATCTTAACCTCAAATCCTCAATTCTCAAATGGACCCAAACCCAATCCCAAACCAAAATCCAAACCAACCAAAATCTCACCACAACTGAAAACCTCGTACGTACATTAATGTCCTCAAAAAAACATCAAAAACCCCAAAACGACATCGTACAAGAAAAAGAAACACTACAAATCTCAATCTTAACACCACGAAAAACCTCGTACTCAAGCTCAGAGGAATCCATAGCAACTGCCACGTCATCATCAACAACAACACCACCACAATTTCAAAGCTTCTCTTACTCTTCACCTTCCTCTTCTGAAATTGAACCTTCAACAACACCAGAAGAACAAGAATTCGTGACCAAACTCAGAAACCCTCAATCGAATATCGTGGAAGAAGCTCTAATCTCTCTCAGAAGAATCACAAAAACGAAAGAGGAATCTAGGGTTCAACTCTGCACCAATAGGGTTCTCTGCTCTTTGCGTTCTTTGATTTTGTTCAAAAACGAGGTTGTAAGAGTCAACGCTCTTGCTTCATTAGTCAACCTTTCGATCGAGAAAGTCAACAAAGTGAAGATCGTACGGTCAGGAATTGTTCCACCGTTGATTGAGGTTTTGAAATTTGGATCCAGTGAATCGCAGGAACATGCTTCGTGTGTGCTCTTTAGTTTAGCGCTTGATGATGATAATAAAACTGCGATTGGTGTTTTGGGTGCTCTTTTGCCTTTGCTTCACGCGCTTAAATCGGAGAGTGAGAAGACGCGTCATGAGTCGAGTTTGGCTCTATGTCATTTGTCTTTAGTGAAGAGTAATAGGGTTAAGATGGTTAAACTCGGGTTTGTTTCGGTTCTTTTGGGGATGGTTAAGTCGGGTTATATGATGGATCGAGTTTTGTTGATTTTGGGTAATTTGGGGTTTGGGTTGGATGGTCGGGCTGCAATGTTGGATGCAGGTGTTGTGGAGTGTTTGGTGGATTTGTTGAGTGGGACTGAATTGGATTCTGAATCGACTCGTGAGAGATGTGTTGGGGTTTTGTATACACTGAGTCATGGCGGGTTGAGGTTTAAGGCGGTGGCGAAAAAGATTAGGGTTGTGGAAATGTTGCAAAAGATGGAGAAAATGAAGAGTGAGAAAACTAATGATAAAGTGAGGAGGATATTGGAGATTATGAGTGAGAAGGAGGTGGAGGAGGAAGAGGTGGATTGGGAGGAGTTGCTTGACTCAGGGTTTACTGGTCGAACTATGAGTCAACTCAATTATGGGACGGGCGAGTCAATTGTTAACTCGAACAAGTTTTGA 1551 0.421 MEIHKNTNKKWRGSKKESKWKKMIFFNTSKTTQNPPQEFLCPISGSLMSDPVIVSSGHSFDRTSIQACTNLNFTPQLQDGTTPNFTTLIPNLNLKSSILKWTQTQSQTKIQTNQNLTTTENLVRTLMSSKKHQKPQNDIVQEKETLQISILTPRKTSYSSSEESIATATSSSTTTPPQFQSFSYSSPSSSEIEPSTTPEEQEFVTKLRNPQSNIVEEALISLRRITKTKEESRVQLCTNRVLCSLRSLILFKNEVVRVNALASLVNLSIEKVNKVKIVRSGIVPPLIEVLKFGSSESQEHASCVLFSLALDDDNKTAIGVLGALLPLLHALKSESEKTRHESSLALCHLSLVKSNRVKMVKLGFVSVLLGMVKSGYMMDRVLLILGNLGFGLDGRAAMLDAGVVECLVDLLSGTELDSESTRERCVGVLYTLSHGGLRFKAVAKKIRVVEMLQKMEKMKSEKTNDKVRRILEIMSEKEVEEEEVDWEELLDSGFTGRTMSQLNYGTGESIVNSNKF 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05985 516 SMART Ubox_2 38 101 IPR003613 GO:0004842|GO:0016567
Vifa1g05985 516 Pfam U-box domain 36 106 IPR003613 GO:0004842|GO:0016567
Vifa1g05985 516 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 123 IPR013083 -
Vifa1g05985 516 ProSiteProfiles U-box domain profile. 34 108 IPR003613 GO:0004842|GO:0016567
Vifa1g05985 516 PANTHER U BOX DOMAIN-CONTAINING 23 475 - -
Vifa1g05985 516 SUPERFAMILY ARM repeat 203 468 IPR016024 -
Vifa1g05985 516 SMART arm_5 391 434 IPR000225 GO:0005515
Vifa1g05985 516 SMART arm_5 311 351 IPR000225 GO:0005515
Vifa1g05985 516 SMART arm_5 270 310 IPR000225 GO:0005515
Vifa1g05985 516 SMART arm_5 229 269 IPR000225 GO:0005515
Vifa1g05985 516 Gene3D - 196 473 IPR011989 -
Vifa1g05985 516 SUPERFAMILY RING/U-box 28 107 - -
Vifa1g05985 516 MobiDBLite consensus disorder prediction 159 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05985 Vifa-Chr1 936957691 936959241 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05985 1 516 U-box Gene Family AT5G40140 47.920 2.10e-145 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05985 - - lja:Lj2g3v1020040.1 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05985 1 936957691 936959241 Vifa1g05985 1 936957691 936959241 ECH
Vifa1g05985 1 936957691 936959241 Vifa1g00129 1 21547750 21552236 PCT