Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05977 ATGGCTGCTAACTCCAACTCCAAAATGCCACAAAACACCATCACTCACCCTCCTTGGTATTCACCAAAAACTGGAATTTACAATAGTATTCATTCTCCCAGGAACCTTCCAACCGACCCTTTTCTCGACGTTGTTTCCTTCATTTTTTCTCACCCTCATGATGGGGTTTTGGCTCTTATTGATTCTTCATCTGGGTCTTCCATTTCTTACTCAAACTTGTTTCCTTTAGTCAAATCAATGGCTTCTGGTCTTCACAAAATGGGTGTTTCACAGGGTGCTGTTGTTACACCATTGAATCCTGTCAGTAGTGTTGCTGAAATTCGTAAGCAGGTTAATGAGTGTGGTGTGAGTTTTGCTTTTACTATACCCGAAAATTTTAAGAAACTAGAGCCATTCAACATTCCAAATATTATTGTGCCAGAAAATGAAAAGGATTTGAAGTATGATTGTTTCTCTTGTTTCTTTAACCTTATTAATAGTAACTTTGATCTTCCTCAAAGGCCAGTTATTAAACAAGAAGACACTGCTGGTATATTGTATTCTTCTGGTACTACAGGTGTTAGCAAAGGAGTTGTTTTAACGCATAGAAATTTAATTGCAATGGTTGAACTATTTGCGAGGTTTCAAGCTTCTTCTTCTTCTTCCAAAAATGTGTTTCTAGCTGCTTTGCCAATGTTTCATATATTTGGTTTATCGCTCTTTACTACCGGATTACTGTCGTTGGGTTCTACAGTTGTTGTAATGAATAAATTTCAAATTGACGAGGCTATTAGGGTGATTGATAAATACAATGTTACACACTTTGATGTTGTTCCACCCATGTTAGTGACATTGACAGAAAAGGCGAAGCGGGTTAATGGAAGTAAGTTGCTGAGTTTGAGACGTGTTTTATGCGGTGCCGCGCCTTTAACCACAACAATTATAAATGAATTTGTCCAAGTTTTCCCTAATGTTGATTTAATACAGGCTTATGGAATGACTGAGTCTGCTGCAGTAGGAAGTTGCTGCTTCGATAGTGACAAGTTTCACAACTATTCTTCAGTAGGATTGTTAGCTCCAAACATGGAGGCAAAAGTGGTAGACATGAACAATGGTGCACTTTTGCCCCCAGGAAGAAGTGGCGGGCTTTGGTTGCGAGGGCCTTCGATTACGAAAGGATATTTAAATAACGAAGAAGCTACGATGGCATCAATTGATAAAGATGGTTGGCTTAATACCGGAGATATTGTTTATTTTGATGAGAATGGATATTTGTATTTATGTGATCGTTTGAAAGACATGATCAAATACAAGGGCTTTCAGATTGCTCCTGCTGATTTAGAAGTTGTGTTAATTTTGCATCCTGAAATAGTTGATGTCGCTGTTACAGGTGTCAAGGATGAAGAAGCTGGGGAGATTCCGGTAGCATTTGTGGTCAAGAAGGCTGGAAGTGTACTTTCCACAAAGAATGTTATAGACCATGTTGCTGAGCAGGTTACTCCATACAAGAAAGTTCGGAAAGTGGTCTTCATCGACAAGATACCGAGGTCTGTGACTGGGAAGATCCTTCGAAGGCAACTCAGGAATGAATTGCCTTCTAATCTCTAA 1587 0.3913 MAANSNSKMPQNTITHPPWYSPKTGIYNSIHSPRNLPTDPFLDVVSFIFSHPHDGVLALIDSSSGSSISYSNLFPLVKSMASGLHKMGVSQGAVVTPLNPVSSVAEIRKQVNECGVSFAFTIPENFKKLEPFNIPNIIVPENEKDLKYDCFSCFFNLINSNFDLPQRPVIKQEDTAGILYSSGTTGVSKGVVLTHRNLIAMVELFARFQASSSSSKNVFLAALPMFHIFGLSLFTTGLLSLGSTVVVMNKFQIDEAIRVIDKYNVTHFDVVPPMLVTLTEKAKRVNGSKLLSLRRVLCGAAPLTTTIINEFVQVFPNVDLIQAYGMTESAAVGSCCFDSDKFHNYSSVGLLAPNMEAKVVDMNNGALLPPGRSGGLWLRGPSITKGYLNNEEATMASIDKDGWLNTGDIVYFDENGYLYLCDRLKDMIKYKGFQIAPADLEVVLILHPEIVDVAVTGVKDEEAGEIPVAFVVKKAGSVLSTKNVIDHVAEQVTPYKKVRKVVFIDKIPRSVTGKILRRQLRNELPSNL 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05977 528 Gene3D - 32 425 IPR042099 -
Vifa1g05977 528 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 21 523 - -
Vifa1g05977 528 Gene3D - 426 525 IPR045851 -
Vifa1g05977 528 Pfam AMP-binding enzyme 90 430 IPR000873 -
Vifa1g05977 528 CDD 4CL 36 520 - -
Vifa1g05977 528 ProSitePatterns Putative AMP-binding domain signature. 178 189 IPR020845 -
Vifa1g05977 528 FunFam 4-coumarate--CoA ligase 2 426 527 - -
Vifa1g05977 528 Pfam AMP-binding enzyme C-terminal domain 440 514 IPR025110 -
Vifa1g05977 528 SUPERFAMILY Acetyl-CoA synthetase-like 53 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05977 Vifa-Chr1 935305756 935308068 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05977 10 524 Monolignol Biosynthesis Gene Families AT4G19010 53.623 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05977 K01904 - gmx:100804808 729.939