Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05975 ATGGATTTTGTTCTAAGTTTCCAAAATATCACAATAGTATTTCTTTCTCTACTATTCATACTTTCTTTTTTCCATTTTCGTCCCTCCAAAATTCTCAATAAGGGTAAAGAACCTCCCATGGCCTCAGGTGCATGGCCTATACTGGGTCATCTCTTAGTATTAGCTAGCTCCAAAACTCCACATAAAATATTAGGCACCATGGCCAACAAATATGGACCCTTGTTCACCATAAAACTTGGTACAAAACATGCTTTGGTACTAAGCAATTGGGAAATGGCAAAAGATTGTTACACTATAAACGACGTCGCAGTTTCGTCTCGTTCGAAACTGGTTGCTATTGAACATATAGCTTATAATCAAGCTAGTTTTGGCTTTGCGCCGTATGGTCCTTATTGGCGCGAAATGCGCAAAATTGTTAGTATGTTTCTTTCAAATCGTGGAATGGAACAACTAAGTCATGTTCGAGTTACTGAAGTTAAAACTTCTATTAAAGAGCTTTTCAATGTTTGGTCTAGCACAAGGAGTGATTCTGGATACTTGTTGGTGGAGATGAAGCAATGGTTCACCAAGTTGGTATTCAATATAGTTTTCCAAACTATGGCTGGGAAGAGATATTTTGGTGACACAGCAGTAGTAGAAGAGAAAGAAGCACAAAAAGTTGTAGAGGCTTTAAGGAAATTCATGCATATGTTAGGAGTATGTACAGTGGCTGATGCTATTCCAATTCTAAGATGGATGAAATTAGGAGTGAAAGCAATGAAAGAAACTGCCAAAGAATTGGACATAGTTTTAGATGATTGGTTAGTGGAACATCATAAGATGAAGGGTTTGGTTGAAAAGGTTGAAGGTGACCAAGATTTTATGGACATGATGATTTCAATGCTTGATGGTGCCACAATCAATGGGTTTGATGCTGATACCATAAACAAAGCAACAACATTGGCATTAATATTAGGAGCAACTGATACAAGCACTGTTACCCTAACATGGGTAATTTGTTTATTGTTGAAAAATCCTCATGCATTAAAAAAAGTGAAAGAAGAACTCAACATTCAAATTGGAGAAGAAAGATTCATAGATGAATCAAACATGAAGAACTTGGTATATCTTCAAGCAATAGTCAAAGAAACGTTAAGGTTATATCCTCCAGGTCCTCTCTCGGCGCCTCGTGAATTCACAGAAGATTGTATTTTAGGTGGTTATCATATCAAAAAAGGAACTCGATTAATCACAAATCTTTGGAAAATTCATACCGATCCAACTATTTGGCCAGATCCGTTAGAGTTCAAGCCAGAACGATTTCTTACTACTCATAAAGATGTTGATGTTAAGGGTCAAGATTTTGAGTTGTTGCCATTTGGGAGTGGTAGAAGGATATGTCCAGGAATATCCTTTGGCCTTCATATGATTCATTTAACTTTGGCTAATTTTCTACACTCATTTGATATCTTAAATGGATCTAATGAACCTGTTGATATGAGTGAAGTTCTTGGTATGACCAATGAAAAAGCAACACCACTTGAGATTAGGGTTAAACCATATTTTTCTCTTAAGTATTATGAAACCATTTGA 1572 0.3639 MDFVLSFQNITIVFLSLLFILSFFHFRPSKILNKGKEPPMASGAWPILGHLLVLASSKTPHKILGTMANKYGPLFTIKLGTKHALVLSNWEMAKDCYTINDVAVSSRSKLVAIEHIAYNQASFGFAPYGPYWREMRKIVSMFLSNRGMEQLSHVRVTEVKTSIKELFNVWSSTRSDSGYLLVEMKQWFTKLVFNIVFQTMAGKRYFGDTAVVEEKEAQKVVEALRKFMHMLGVCTVADAIPILRWMKLGVKAMKETAKELDIVLDDWLVEHHKMKGLVEKVEGDQDFMDMMISMLDGATINGFDADTINKATTLALILGATDTSTVTLTWVICLLLKNPHALKKVKEELNIQIGEERFIDESNMKNLVYLQAIVKETLRLYPPGPLSAPREFTEDCILGGYHIKKGTRLITNLWKIHTDPTIWPDPLEFKPERFLTTHKDVDVKGQDFELLPFGSGRRICPGISFGLHMIHLTLANFLHSFDILNGSNEPVDMSEVLGMTNEKATPLEIRVKPYFSLKYYETI 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05975 523 PRINTS P450 superfamily signature 451 460 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05975 523 PRINTS P450 superfamily signature 319 336 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05975 523 PRINTS P450 superfamily signature 372 383 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05975 523 Pfam Cytochrome P450 40 499 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05975 523 FunFam Cytochrome P450 82C4 29 512 - -
Vifa1g05975 523 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 453 462 IPR017972 GO:0005506|GO:0016705
Vifa1g05975 523 SUPERFAMILY Cytochrome P450 44 513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05975 523 PRINTS E-class P450 group I signature 460 483 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05975 523 PRINTS E-class P450 group I signature 371 389 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05975 523 PRINTS E-class P450 group I signature 450 460 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05975 523 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05975 523 PRINTS E-class P450 group I signature 328 354 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05975 523 PRINTS E-class P450 group I signature 412 436 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05975 523 PRINTS E-class P450 group I signature 191 209 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05975 523 Gene3D Cytochrome P450 28 519 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05975 523 CDD CYP82 72 513 - -
Vifa1g05975 523 PANTHER CYTOCHROME P450 82C3-RELATED 16 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05975 Vifa-Chr1 934927672 934929417 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05975 39 513 Cytochrome P450 AT4G31940 47.216 3.51e-166 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05975 - - gmx:100793075 666.766