Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05971 ATGGCAGATAGTTCAGTATCATTTTTATTGGACAAGCTAACTTCCTTACTTCAAGAAGAAGTGAATTTACAAAGAGGGGTCCGTGAAGATGTTCAATACATCAAAGATGAACTGGAACGCCACAAAGCCATCTTGATGATGGCTGATTCAATGGAAGACAAGGACCCTGAACTCAAAGTATGGGTTAAAAGGGTAAGAGAGATTGCTGAAGACATGGAAGATGCTATAGATGAATTCAGTATTCGCCTTGTTGATCATCATCAACAAGGAACCAGAAATTCTTTTATTCATAGGATGGTTTTTGGCCTCAAGACCCTTAGAGCTAGGCACAGAATAGCTTCAGATATACAAGAAATCAAATCCAAGGTTGGGATTCTCTCTCATGGACGTCCAATCATATCTGGTGTAGGTTCAGGCTCAAGTCAAAGGCTTTCATCAAGGCTTGATAGTCAAGGTGATGCTCTTCTGCTAGAGGAAGCTGATTTAGTTGGAATTGAACAACCAAAGAAGCAAGTGTGTGATTTCCTTTTCAAAGATGAATCAAATAGAGCTGTGATTTCAATCTATGGTATGGGAGGTTTAGGGAAAACAACATTGGCAAAACAAGTCTATGATGATCCAAAAGTCAAGAAACGTTTCAGGATTCATGCTTGGGTTAATCTCTCTCAATCTTTCAAGATGGAAAAGTTACTGAAAGACCTTTTTCAACAGCTTCATAGTGTCATTGGCAAACCAGTTCCAGAAGCCGTTGGAACGATGAAAATCGAAAAGGTGAAAGAGTCTATCAAGAATTTGCTCCAAGGAAGTAGGTATCTTATTGTGCTTGATAATGTGTGGCATGTGAATGTATGGGATGCTGTGAGGCTTGCTTTGCCTAATAACAACCGCGGAAGTAGAGTGATGATTACCACACGAAACAAAGATATAGCGATGTACTCGTGTGCTGGATTTGGTAAGAATTTTCACCTTGAATTCTTACCTGAGCAAGAAGCTTGGTCACTTTTTTGTAGGAAGACGTTTCAAGGTAACTCGTGTCCGCCTCATCTTGAAGAAGTTTGTAGGAAGATCTTGAAATTGTGTGGAGGGTTGCCACTAGCAATTGTGGCAGTAAGTGGTGCTTTGGCTACACGAGGAACGTCGAACATAGAAGAGTGGCAGATAGTTTGCAGAAGTTTTGGATCTGAAATTGATGGAAATGACAAACTGGAGGATATGAAGAAAGTACTTTCCTTAAGTTTCAATGAGTTGCCTTACTATCTTAAATCATGTTTGTTGTATTTAAGCATGTTTCCCGGACGTCATGCCATCGAGCATACGAGATTGATTCGGTTGTGGATAGCTGAAGGGTTTGTAACTGGCGAAGATGGTAAGACACTAGAGGAAGTTGCAGATAGTTACCTTAAGGAGCTTTTGAACCGAAGTTTTCTCCATGTGGTAGAAAAAACCAGTGATGGAAGGATGAAGACTTGTTTCATGCATGACCTTCTAAGGGAAATTGTCAGTTTCAAGTCAAAGGATCAGAACTTTGCAACAATAGTAAGAGATCAAGAATTGGTATGGCCGGAACAAGTTCGTCGTTTATCGGTCATAAATTCATCCTATGATGTACTTAAACAGAATAAAACCAGATTCAAACTAAGGTCTTTGCTAATGTTTGCATTGCCAGACACACTCAATCATTTCTCTCTCCACGAATTATGCTCCTCCACTGGTGTTAAGTTGCTCAGGGTGTTAGATTTGAAAGACGCGCCTTTGGAGGATTTTCCTGCTGAAATTGTCAATCTTTACCTTCTCAAGTATCTAAGTTTGAAGAATACAAATGTGAAAAGCATTCCAGGTTCCATTAAGAAGCTGCAAAACTTGGAGACATTGAATCTTAAACACACTTATGTCACTGAATTGCCTGTTGAAATTGCGGAGCTGAAACGATTACGCCATCTCCTTGTGTATCGTTACGAGATTGAATCCTATGCTCATTTCCACTTAAGGCATGGATTCAAAGTAGTTGCACCTATAGGAAACATGCTATCTTTGCAAAAGCTTTGTTTCATAGAGGTAGATCAAGGAAGTGAAGCATTGATGGTTGAGCTAGGAAAACTCACTCAACTTAGGAGGCTAGGCATTAGAAAAATGAGAAAAGAAGACGGTCCCGCTTTATGTTCAGCTATTGAGAAGATGGTCCATCTTAGATCATTGTCCATAACTGCAATAAACGAAGACGAGATAATCGATATTCACAACATCTCAAAGCCTCCTCAGTATCTTCAGCAGCTATACTTGAGCGGTCGTTTAGAGAAGTTTCCACAATGGATAAACTCTCTCAAGAACTTGTTCAGAGTTTTCTTAAAATGGAGCAGGTTAGAGGAGGACCCTCTTCAGTATCTTCAAAACTTGCCAAATCTTCGACATCTTGAGTTTCTTCAAGTTTACATTGGCGAGACATTGCATTTCAACGCAAACGGGTTTCAAAATCTAAAAGTTTTAGGCCTCGACGATTTAGAAGGACTAAACTCAATGACAATCGAGGAGGGAGCAATGCAAGGTCTTAAAAAGTTGGTCATTCAACGCTGCGGTTCATTCAAGATTGTACCATTAGGCATCGAACACTTAACTAAGCTAAAAACAATCGAGTTCTTTGATATGCCTGATGAATTGATTACGGCGCTGCGTCCAAATGGCGGGGACGATTACTGGAGAGTACAACATGTTCCAACAGTTTATTCTACATACTGGAGAGACGGTGGTTGGGATGTTTATTCATTAGAGACTTTTGGGGAGAGAGTGACAGATTCCAATCATATTACTGCAAAGAGGACTTTTGAGCCTCCTACTCTTTGGAAGGTTTAA 2847 0.4004 MADSSVSFLLDKLTSLLQEEVNLQRGVREDVQYIKDELERHKAILMMADSMEDKDPELKVWVKRVREIAEDMEDAIDEFSIRLVDHHQQGTRNSFIHRMVFGLKTLRARHRIASDIQEIKSKVGILSHGRPIISGVGSGSSQRLSSRLDSQGDALLLEEADLVGIEQPKKQVCDFLFKDESNRAVISIYGMGGLGKTTLAKQVYDDPKVKKRFRIHAWVNLSQSFKMEKLLKDLFQQLHSVIGKPVPEAVGTMKIEKVKESIKNLLQGSRYLIVLDNVWHVNVWDAVRLALPNNNRGSRVMITTRNKDIAMYSCAGFGKNFHLEFLPEQEAWSLFCRKTFQGNSCPPHLEEVCRKILKLCGGLPLAIVAVSGALATRGTSNIEEWQIVCRSFGSEIDGNDKLEDMKKVLSLSFNELPYYLKSCLLYLSMFPGRHAIEHTRLIRLWIAEGFVTGEDGKTLEEVADSYLKELLNRSFLHVVEKTSDGRMKTCFMHDLLREIVSFKSKDQNFATIVRDQELVWPEQVRRLSVINSSYDVLKQNKTRFKLRSLLMFALPDTLNHFSLHELCSSTGVKLLRVLDLKDAPLEDFPAEIVNLYLLKYLSLKNTNVKSIPGSIKKLQNLETLNLKHTYVTELPVEIAELKRLRHLLVYRYEIESYAHFHLRHGFKVVAPIGNMLSLQKLCFIEVDQGSEALMVELGKLTQLRRLGIRKMRKEDGPALCSAIEKMVHLRSLSITAINEDEIIDIHNISKPPQYLQQLYLSGRLEKFPQWINSLKNLFRVFLKWSRLEEDPLQYLQNLPNLRHLEFLQVYIGETLHFNANGFQNLKVLGLDDLEGLNSMTIEEGAMQGLKKLVIQRCGSFKIVPLGIEHLTKLKTIEFFDMPDELITALRPNGGDDYWRVQHVPTVYSTYWRDGGWDVYSLETFGERVTDSNHITAKRTFEPPTLWKV 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05971 948 PRINTS Disease resistance protein signature 185 200 - -
Vifa1g05971 948 PRINTS Disease resistance protein signature 360 374 - -
Vifa1g05971 948 PRINTS Disease resistance protein signature 265 279 - -
Vifa1g05971 948 PRINTS Disease resistance protein signature 616 632 - -
Vifa1g05971 948 Gene3D - 325 412 IPR042197 -
Vifa1g05971 948 CDD RX-CC_like 2 123 IPR038005 -
Vifa1g05971 948 Pfam Rx N-terminal domain 6 93 IPR041118 -
Vifa1g05971 948 Gene3D Ribonuclease Inhibitor 501 887 IPR032675 -
Vifa1g05971 948 Gene3D - 151 314 IPR027417 -
Vifa1g05971 948 PANTHER DISEASE RESISTANCE PROTEIN RP 32 858 IPR044974 GO:0006952
Vifa1g05971 948 Gene3D - 5 113 - -
Vifa1g05971 948 FunFam Probable disease resistance protein At1g63360 413 502 - -
Vifa1g05971 948 SUPERFAMILY L domain-like 492 883 - -
Vifa1g05971 948 Pfam NB-ARC domain 166 414 IPR002182 GO:0043531
Vifa1g05971 948 FunFam Probable disease resistance protein At1g61300 153 315 - -
Vifa1g05971 948 Gene3D - 413 500 IPR036388 -
Vifa1g05971 948 Coils Coil 62 82 - -
Vifa1g05971 948 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 427 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05971 Vifa-Chr1 934011330 934015242 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05971 185 367 WRKY Transcription Factor Family AT5G45050 26.630 1.03e-07 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05971 K13457 - gmx:100305458 1443.33