Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05970 ATGTCACAAGGTTCTGAGCAATGGGAATGGTCTGAAATGCAAGGCATTGAGCTACTTTCATCTTCTCAATCAACAACTCCAACACCAGCATTGGAGTTAGAAAGAGTTGAATCCAAGAAACATATGGAAGAGGAAAGTTCATTACCCAACAACAAAAGCTGTGACTTTTCTGATGGAAATGAGAAGATTAAGAATGTTCCTTCTGTTGGATTTGGTGAGCTTTTCAGATTTGCTGATGGGTTGGATTATATTCTCATGACAGTTGGAACTCTTGGAGCAATTCTCCATGGTTGTTCATTGCCACTTTTTCTTCGGTTCTTTGCTGATCTTGTTAACTCTTTTGGTTCCAATGCTGATGATTTGGACAAGATGACCCAAGAAGTTGTCAAGTATGCATTTTACTTTCTGGTTGTTGGTGCTGCTATTTGGGCATCTTCACGGGCAGAGATATCTTGTTGGATGTGGACTGGTGAGAGACAATCAACAAGGATGAGAATTAAGTATCTTGAAGCTGCTTTGGATCAAGATATTCAGTTCTTCGACACTGAAGTTCGAACTTCCGATGTTGTTTTCGCCATCAACACTGATGCTGTTATGGTACAAGATGCAATAAGTGAGAAGTTAGGTAATTTTATTCACTATATGGCTACATTTGTTTTTGGATTTGCTGTTGGTTTTAGTGCTGTTTGGCAATTGGCATTGGTTACACTTGCTGTTGTGCCTATGATAGCTGTAATAGGAGGCATTCATACTACTACTTTGGCTAAGTTATCTGGTAAAAGCCAAGAAGCTCTTTCTCAAGCTGGCAACATTGTGGAACAGACTATTGTTCAAATTAGAGTGGTGTTAGCATATGTTGGAGAGACAAAAGCACAACTCAGCTGCTCCCATCGCACATCTTCATCTATTCATTGTTACCGTCAAGTTGCACGGTATCATCAGTTCACAAGCTACAAGAGAGTACAGCCGGGGTTCATCGCCAGAATGGTTACATATGCAGGTGGGAGGTGGTTTTGA 1017 0.4061 MSQGSEQWEWSEMQGIELLSSSQSTTPTPALELERVESKKHMEEESSLPNNKSCDFSDGNEKIKNVPSVGFGELFRFADGLDYILMTVGTLGAILHGCSLPLFLRFFADLVNSFGSNADDLDKMTQEVVKYAFYFLVVGAAIWASSRAEISCWMWTGERQSTRMRIKYLEAALDQDIQFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVFGFAVGFSAVWQLALVTLAVVPMIAVIGGIHTTTLAKLSGKSQEALSQAGNIVEQTIVQIRVVLAYVGETKAQLSCSHRTSSSIHCYRQVARYHQFTSYKRVQPGFIARMVTYAGGRWF 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05970 338 Pfam ABC transporter transmembrane region 87 292 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g05970 338 PANTHER ABC TRANSPORTER B FAMILY 57 296 IPR039421 -
Vifa1g05970 338 FunFam ABC transporter B family member 1 73 308 - -
Vifa1g05970 338 Gene3D ABC transporter type 1, transmembrane domain 65 334 IPR036640 GO:0005524|GO:0016020
Vifa1g05970 338 MobiDBLite consensus disorder prediction 36 55 - -
Vifa1g05970 338 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 88 288 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g05970 338 CDD ABC_6TM_Pgp_ABCB1_D1_like 86 290 - -
Vifa1g05970 338 SUPERFAMILY ABC transporter transmembrane region 74 315 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05970 Vifa-Chr1 933274813 933275829 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05970 62 291 Calmodulin-binding Proteins AT2G36910 82.174 9.86e-131 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05970 K05658 - gmx:100777382 436.417